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dbVar

Database of genomic structural variation

esv2763455

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:17,048

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 250 SVs from 52 studies. See in: genome view

Remapped(Score: Perfect):40,189,233-40,206,280

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2763455	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	40,189,233	40,206,280
esv2763455	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	40,416,373	40,433,420
esv2763455	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000002.10	Chr2	40,269,877	40,286,924

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv7012577	copy number loss	SW_1196	SNP array	SNP genotyping analysis	21
essv7012588	copy number loss	SW_1342	SNP array	SNP genotyping analysis	28

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv7012577	Remapped	Perfect	NC_000002.12:g.(?_ 40189233)_(4020628 0_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	40,189,233	40,206,280
essv7012588	Remapped	Perfect	NC_000002.12:g.(?_ 40189233)_(4020628 0_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	40,189,233	40,206,280
essv7012577	Remapped	Perfect	NC_000002.11:g.(?_ 40416373)_(4043342 0_?)del	GRCh37.p13	First Pass	NC_000002.11	Chr2	40,416,373	40,433,420
essv7012588	Remapped	Perfect	NC_000002.11:g.(?_ 40416373)_(4043342 0_?)del	GRCh37.p13	First Pass	NC_000002.11	Chr2	40,416,373	40,433,420
essv7012577	Submitted genomic		NC_000002.10:g.(?_ 40269877)_(4028692 4_?)del	NCBI36 (hg18)		NC_000002.10	Chr2	40,269,877	40,286,924
essv7012588	Submitted genomic		NC_000002.10:g.(?_ 40269877)_(4028692 4_?)del	NCBI36 (hg18)		NC_000002.10	Chr2	40,269,877	40,286,924

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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