esv2763552
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:7,944
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 131 SVs from 38 studies. See in: genome view
Overlapping variant regions from other studies: 131 SVs from 38 studies. See in: genome view
Overlapping variant regions from other studies: 17 SVs from 8 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2763552 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 53,991,782 | 53,999,725 |
| esv2763552 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 53,856,580 | 53,864,523 |
| esv2763552 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 53,964,539 | 53,972,482 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv7032096 | copy number loss | SW_1322 | SNP array | SNP genotyping analysis | 30 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv7032096 | Remapped | Perfect | NC_000006.12:g.(?_ 53991782)_(5399972 5_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 53,991,782 | 53,999,725 |
| essv7032096 | Remapped | Perfect | NC_000006.11:g.(?_ 53856580)_(5386452 3_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 53,856,580 | 53,864,523 |
| essv7032096 | Submitted genomic | NC_000006.10:g.(?_ 53964539)_(5397248 2_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 53,964,539 | 53,972,482 |