esv2763629
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:17
- Validation:Not tested
- Clinical Assertions: No
- Region Size:273,225
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1526 SVs from 94 studies. See in: genome view
Overlapping variant regions from other studies: 1526 SVs from 94 studies. See in: genome view
Overlapping variant regions from other studies: 651 SVs from 28 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2763629 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 35,593,868 | 35,867,092 |
| esv2763629 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 35,818,934 | 36,092,158 |
| esv2763629 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000002.10 | Chr2 | 35,672,438 | 35,945,662 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv7012177 | copy number loss | SW_0830 | SNP array | SNP genotyping analysis | 25 |
| essv7012189 | copy number loss | SW_0047 | SNP array | SNP genotyping analysis | 42 |
| essv7012200 | copy number loss | SW_0240 | SNP array | SNP genotyping analysis | 22 |
| essv7012211 | copy number loss | SW_0285 | SNP array | SNP genotyping analysis | 40 |
| essv7012222 | copy number loss | SW_0817 | SNP array | SNP genotyping analysis | 27 |
| essv7012233 | copy number loss | SW_1028 | SNP array | SNP genotyping analysis | 47 |
| essv7012244 | copy number loss | SW_1090 | SNP array | SNP genotyping analysis | 23 |
| essv7012255 | copy number loss | SW_1102 | SNP array | SNP genotyping analysis | 41 |
| essv7012266 | copy number loss | SW_1132 | SNP array | SNP genotyping analysis | 34 |
| essv7012277 | copy number loss | SW_0584 | SNP array | SNP genotyping analysis | 35 |
| essv7012288 | copy number loss | SW_0818 | SNP array | SNP genotyping analysis | 30 |
| essv7012300 | copy number loss | SW_0884 | SNP array | SNP genotyping analysis | 33 |
| essv7012311 | copy number loss | SW_1020 | SNP array | SNP genotyping analysis | 32 |
| essv7012322 | copy number loss | SW_1048 | SNP array | SNP genotyping analysis | 22 |
| essv7012333 | copy number loss | SW_1055 | SNP array | SNP genotyping analysis | 34 |
| essv7012344 | copy number loss | SW_1100 | SNP array | SNP genotyping analysis | 27 |
| essv7012355 | copy number loss | SW_1377 | SNP array | SNP genotyping analysis | 26 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv7012177 | Remapped | Perfect | NC_000002.12:g.(?_ 35593868)_(3586486 3_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 35,593,868 | 35,864,863 |
| essv7012189 | Remapped | Perfect | NC_000002.12:g.(?_ 35593868)_(3586709 2_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 35,593,868 | 35,867,092 |
| essv7012200 | Remapped | Perfect | NC_000002.12:g.(?_ 35750907)_(3576288 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 35,750,907 | 35,762,881 |
| essv7012211 | Remapped | Perfect | NC_000002.12:g.(?_ 35750907)_(3576288 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 35,750,907 | 35,762,881 |
| essv7012222 | Remapped | Perfect | NC_000002.12:g.(?_ 35750907)_(3576288 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 35,750,907 | 35,762,881 |
| essv7012233 | Remapped | Perfect | NC_000002.12:g.(?_ 35750907)_(3576288 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 35,750,907 | 35,762,881 |
| essv7012244 | Remapped | Perfect | NC_000002.12:g.(?_ 35750907)_(3576288 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 35,750,907 | 35,762,881 |
| essv7012255 | Remapped | Perfect | NC_000002.12:g.(?_ 35750907)_(3576288 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 35,750,907 | 35,762,881 |
| essv7012266 | Remapped | Perfect | NC_000002.12:g.(?_ 35750907)_(3576288 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 35,750,907 | 35,762,881 |
| essv7012277 | Remapped | Perfect | NC_000002.12:g.(?_ 35752724)_(3576288 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 35,752,724 | 35,762,881 |
| essv7012288 | Remapped | Perfect | NC_000002.12:g.(?_ 35752724)_(3576288 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 35,752,724 | 35,762,881 |
| essv7012300 | Remapped | Perfect | NC_000002.12:g.(?_ 35752724)_(3576288 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 35,752,724 | 35,762,881 |
| essv7012311 | Remapped | Perfect | NC_000002.12:g.(?_ 35752724)_(3576288 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 35,752,724 | 35,762,881 |
| essv7012322 | Remapped | Perfect | NC_000002.12:g.(?_ 35752724)_(3576288 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 35,752,724 | 35,762,881 |
| essv7012333 | Remapped | Perfect | NC_000002.12:g.(?_ 35752724)_(3576288 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 35,752,724 | 35,762,881 |
| essv7012344 | Remapped | Perfect | NC_000002.12:g.(?_ 35752724)_(3576288 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 35,752,724 | 35,762,881 |
| essv7012355 | Remapped | Perfect | NC_000002.12:g.(?_ 35752724)_(3576288 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 35,752,724 | 35,762,881 |
| essv7012177 | Remapped | Perfect | NC_000002.11:g.(?_ 35818934)_(3608992 9_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 35,818,934 | 36,089,929 |
| essv7012189 | Remapped | Perfect | NC_000002.11:g.(?_ 35818934)_(3609215 8_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 35,818,934 | 36,092,158 |
| essv7012200 | Remapped | Perfect | NC_000002.11:g.(?_ 35975973)_(3598794 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 35,975,973 | 35,987,947 |
| essv7012211 | Remapped | Perfect | NC_000002.11:g.(?_ 35975973)_(3598794 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 35,975,973 | 35,987,947 |
| essv7012222 | Remapped | Perfect | NC_000002.11:g.(?_ 35975973)_(3598794 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 35,975,973 | 35,987,947 |
| essv7012233 | Remapped | Perfect | NC_000002.11:g.(?_ 35975973)_(3598794 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 35,975,973 | 35,987,947 |
| essv7012244 | Remapped | Perfect | NC_000002.11:g.(?_ 35975973)_(3598794 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 35,975,973 | 35,987,947 |
| essv7012255 | Remapped | Perfect | NC_000002.11:g.(?_ 35975973)_(3598794 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 35,975,973 | 35,987,947 |
| essv7012266 | Remapped | Perfect | NC_000002.11:g.(?_ 35975973)_(3598794 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 35,975,973 | 35,987,947 |
| essv7012277 | Remapped | Perfect | NC_000002.11:g.(?_ 35977790)_(3598794 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 35,977,790 | 35,987,947 |
| essv7012288 | Remapped | Perfect | NC_000002.11:g.(?_ 35977790)_(3598794 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 35,977,790 | 35,987,947 |
| essv7012300 | Remapped | Perfect | NC_000002.11:g.(?_ 35977790)_(3598794 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 35,977,790 | 35,987,947 |
| essv7012311 | Remapped | Perfect | NC_000002.11:g.(?_ 35977790)_(3598794 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 35,977,790 | 35,987,947 |
| essv7012322 | Remapped | Perfect | NC_000002.11:g.(?_ 35977790)_(3598794 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 35,977,790 | 35,987,947 |
| essv7012333 | Remapped | Perfect | NC_000002.11:g.(?_ 35977790)_(3598794 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 35,977,790 | 35,987,947 |
| essv7012344 | Remapped | Perfect | NC_000002.11:g.(?_ 35977790)_(3598794 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 35,977,790 | 35,987,947 |
| essv7012355 | Remapped | Perfect | NC_000002.11:g.(?_ 35977790)_(3598794 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 35,977,790 | 35,987,947 |
| essv7012177 | Submitted genomic | NC_000002.10:g.(?_ 35672438)_(3594343 3_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 35,672,438 | 35,943,433 | ||
| essv7012189 | Submitted genomic | NC_000002.10:g.(?_ 35672438)_(3594566 2_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 35,672,438 | 35,945,662 | ||
| essv7012200 | Submitted genomic | NC_000002.10:g.(?_ 35829477)_(3584145 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 35,829,477 | 35,841,451 | ||
| essv7012211 | Submitted genomic | NC_000002.10:g.(?_ 35829477)_(3584145 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 35,829,477 | 35,841,451 | ||
| essv7012222 | Submitted genomic | NC_000002.10:g.(?_ 35829477)_(3584145 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 35,829,477 | 35,841,451 | ||
| essv7012233 | Submitted genomic | NC_000002.10:g.(?_ 35829477)_(3584145 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 35,829,477 | 35,841,451 | ||
| essv7012244 | Submitted genomic | NC_000002.10:g.(?_ 35829477)_(3584145 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 35,829,477 | 35,841,451 | ||
| essv7012255 | Submitted genomic | NC_000002.10:g.(?_ 35829477)_(3584145 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 35,829,477 | 35,841,451 | ||
| essv7012266 | Submitted genomic | NC_000002.10:g.(?_ 35829477)_(3584145 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 35,829,477 | 35,841,451 | ||
| essv7012277 | Submitted genomic | NC_000002.10:g.(?_ 35831294)_(3584145 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 35,831,294 | 35,841,451 | ||
| essv7012288 | Submitted genomic | NC_000002.10:g.(?_ 35831294)_(3584145 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 35,831,294 | 35,841,451 | ||
| essv7012300 | Submitted genomic | NC_000002.10:g.(?_ 35831294)_(3584145 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 35,831,294 | 35,841,451 | ||
| essv7012311 | Submitted genomic | NC_000002.10:g.(?_ 35831294)_(3584145 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 35,831,294 | 35,841,451 | ||
| essv7012322 | Submitted genomic | NC_000002.10:g.(?_ 35831294)_(3584145 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 35,831,294 | 35,841,451 | ||
| essv7012333 | Submitted genomic | NC_000002.10:g.(?_ 35831294)_(3584145 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 35,831,294 | 35,841,451 | ||
| essv7012344 | Submitted genomic | NC_000002.10:g.(?_ 35831294)_(3584145 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 35,831,294 | 35,841,451 | ||
| essv7012355 | Submitted genomic | NC_000002.10:g.(?_ 35831294)_(3584145 1_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 35,831,294 | 35,841,451 |