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dbVar

Database of genomic structural variation

esv2763667

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:117,698

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1108 SVs from 76 studies. See in: genome view

Remapped(Score: Perfect):15,071,800-15,189,497

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2763667	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000020.11	Chr20	15,071,800	15,189,497
esv2763667	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000020.10	Chr20	15,052,446	15,170,143
esv2763667	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000020.9	Chr20	15,000,446	15,118,143

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv7004029	copy number loss	SW_1547	SNP array	SNP genotyping analysis	33
essv7004030	copy number loss	SW_0771	SNP array	SNP genotyping analysis	43

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv7004029	Remapped	Perfect	NC_000020.11:g.(?_ 15071800)_(1517013 7_?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	15,071,800	15,170,137
essv7004030	Remapped	Perfect	NC_000020.11:g.(?_ 15155292)_(1518949 7_?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	15,155,292	15,189,497
essv7004029	Remapped	Perfect	NC_000020.10:g.(?_ 15052446)_(1515078 3_?)del	GRCh37.p13	First Pass	NC_000020.10	Chr20	15,052,446	15,150,783
essv7004030	Remapped	Perfect	NC_000020.10:g.(?_ 15135938)_(1517014 3_?)del	GRCh37.p13	First Pass	NC_000020.10	Chr20	15,135,938	15,170,143
essv7004029	Submitted genomic		NC_000020.9:g.(?_1 5000446)_(15098783 _?)del	NCBI36 (hg18)		NC_000020.9	Chr20	15,000,446	15,098,783
essv7004030	Submitted genomic		NC_000020.9:g.(?_1 5083938)_(15118143 _?)del	NCBI36 (hg18)		NC_000020.9	Chr20	15,083,938	15,118,143

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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