esv2763716
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:137,403
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 516 SVs from 73 studies. See in: genome view
Overlapping variant regions from other studies: 516 SVs from 73 studies. See in: genome view
Overlapping variant regions from other studies: 166 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2763716 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 25,991,818 | 26,129,220 |
| esv2763716 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 26,033,309 | 26,170,711 |
| esv2763716 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 26,008,313 | 26,145,715 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv7026389 | copy number loss | SW_1048 | SNP array | SNP genotyping analysis | 22 |
| essv7026400 | copy number loss | SW_1086 | SNP array | SNP genotyping analysis | 35 |
| essv7026412 | copy number loss | SW_1322 | SNP array | SNP genotyping analysis | 30 |
| essv7026423 | copy number loss | SW_0761 | SNP array | SNP genotyping analysis | 26 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv7026389 | Remapped | Perfect | NC_000003.12:g.(?_ 25991818)_(2612422 7_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 25,991,818 | 26,124,227 |
| essv7026400 | Remapped | Perfect | NC_000003.12:g.(?_ 25991818)_(2612922 0_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 25,991,818 | 26,129,220 |
| essv7026412 | Remapped | Perfect | NC_000003.12:g.(?_ 26000038)_(2612922 0_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 26,000,038 | 26,129,220 |
| essv7026423 | Remapped | Perfect | NC_000003.12:g.(?_ 26003778)_(2611508 7_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 26,003,778 | 26,115,087 |
| essv7026389 | Remapped | Perfect | NC_000003.11:g.(?_ 26033309)_(2616571 8_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 26,033,309 | 26,165,718 |
| essv7026400 | Remapped | Perfect | NC_000003.11:g.(?_ 26033309)_(2617071 1_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 26,033,309 | 26,170,711 |
| essv7026412 | Remapped | Perfect | NC_000003.11:g.(?_ 26041529)_(2617071 1_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 26,041,529 | 26,170,711 |
| essv7026423 | Remapped | Perfect | NC_000003.11:g.(?_ 26045269)_(2615657 8_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 26,045,269 | 26,156,578 |
| essv7026389 | Submitted genomic | NC_000003.10:g.(?_ 26008313)_(2614072 2_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 26,008,313 | 26,140,722 | ||
| essv7026400 | Submitted genomic | NC_000003.10:g.(?_ 26008313)_(2614571 5_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 26,008,313 | 26,145,715 | ||
| essv7026412 | Submitted genomic | NC_000003.10:g.(?_ 26016533)_(2614571 5_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 26,016,533 | 26,145,715 | ||
| essv7026423 | Submitted genomic | NC_000003.10:g.(?_ 26020273)_(2613158 2_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 26,020,273 | 26,131,582 |