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dbVar

Database of genomic structural variation

esv2763732

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:10,331

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 350 SVs from 68 studies. See in: genome view

Remapped(Score: Perfect):162,498,841-162,509,171

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2763732	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	162,498,841	162,509,171
esv2763732	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000003.11	Chr3	162,216,629	162,226,959
esv2763732	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000003.10	Chr3	163,699,323	163,709,653

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv7028010	copy number loss	SW_0172	SNP array	SNP genotyping analysis	45
essv7028011	copy number loss	SW_0200	SNP array	SNP genotyping analysis	51
essv7028012	copy number loss	SW_0295	SNP array	SNP genotyping analysis	40
essv7028014	copy number loss	SW_0524	SNP array	SNP genotyping analysis	23
essv7028015	copy number loss	SW_0592	SNP array	SNP genotyping analysis	46
essv7028016	copy number loss	SW_1092	SNP array	SNP genotyping analysis	38

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv7028010	Remapped	Perfect	NC_000003.12:g.(?_ 162498841)_(162509 171_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	162,498,841	162,509,171
essv7028011	Remapped	Perfect	NC_000003.12:g.(?_ 162498841)_(162509 171_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	162,498,841	162,509,171
essv7028012	Remapped	Perfect	NC_000003.12:g.(?_ 162498841)_(162509 171_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	162,498,841	162,509,171
essv7028014	Remapped	Perfect	NC_000003.12:g.(?_ 162498841)_(162509 171_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	162,498,841	162,509,171
essv7028015	Remapped	Perfect	NC_000003.12:g.(?_ 162498841)_(162509 171_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	162,498,841	162,509,171
essv7028016	Remapped	Perfect	NC_000003.12:g.(?_ 162498841)_(162509 171_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	162,498,841	162,509,171
essv7028010	Remapped	Perfect	NC_000003.11:g.(?_ 162216629)_(162226 959_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	162,216,629	162,226,959
essv7028011	Remapped	Perfect	NC_000003.11:g.(?_ 162216629)_(162226 959_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	162,216,629	162,226,959
essv7028012	Remapped	Perfect	NC_000003.11:g.(?_ 162216629)_(162226 959_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	162,216,629	162,226,959
essv7028014	Remapped	Perfect	NC_000003.11:g.(?_ 162216629)_(162226 959_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	162,216,629	162,226,959
essv7028015	Remapped	Perfect	NC_000003.11:g.(?_ 162216629)_(162226 959_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	162,216,629	162,226,959
essv7028016	Remapped	Perfect	NC_000003.11:g.(?_ 162216629)_(162226 959_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	162,216,629	162,226,959
essv7028010	Submitted genomic		NC_000003.10:g.(?_ 163699323)_(163709 653_?)del	NCBI36 (hg18)		NC_000003.10	Chr3	163,699,323	163,709,653
essv7028011	Submitted genomic		NC_000003.10:g.(?_ 163699323)_(163709 653_?)del	NCBI36 (hg18)		NC_000003.10	Chr3	163,699,323	163,709,653
essv7028012	Submitted genomic		NC_000003.10:g.(?_ 163699323)_(163709 653_?)del	NCBI36 (hg18)		NC_000003.10	Chr3	163,699,323	163,709,653
essv7028014	Submitted genomic		NC_000003.10:g.(?_ 163699323)_(163709 653_?)del	NCBI36 (hg18)		NC_000003.10	Chr3	163,699,323	163,709,653
essv7028015	Submitted genomic		NC_000003.10:g.(?_ 163699323)_(163709 653_?)del	NCBI36 (hg18)		NC_000003.10	Chr3	163,699,323	163,709,653
essv7028016	Submitted genomic		NC_000003.10:g.(?_ 163699323)_(163709 653_?)del	NCBI36 (hg18)		NC_000003.10	Chr3	163,699,323	163,709,653

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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