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dbVar

Database of genomic structural variation

esv2763751

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:220,351

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 846 SVs from 69 studies. See in: genome view

Remapped(Score: Good):60,086,233-60,306,583

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2763751	Remapped	Good	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	60,086,233	60,306,583
esv2763751	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000003.11	Chr3	60,071,959	60,292,312
esv2763751	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000003.10	Chr3	60,046,999	60,267,352

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv7027233	copy number loss	SW_1236	SNP array	SNP genotyping analysis	23
essv7027234	copy number loss	SW_1471	SNP array	SNP genotyping analysis	25

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv7027233	Remapped	Good	NC_000003.12:g.(?_ 60086233)_(6029141 1_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	60,086,233	60,291,411
essv7027234	Remapped	Good	NC_000003.12:g.(?_ 60265359)_(6030658 3_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	60,265,359	60,306,583
essv7027233	Remapped	Perfect	NC_000003.11:g.(?_ 60071959)_(6027714 0_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	60,071,959	60,277,140
essv7027234	Remapped	Perfect	NC_000003.11:g.(?_ 60251087)_(6029231 2_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	60,251,087	60,292,312
essv7027233	Submitted genomic		NC_000003.10:g.(?_ 60046999)_(6025218 0_?)del	NCBI36 (hg18)		NC_000003.10	Chr3	60,046,999	60,252,180
essv7027234	Submitted genomic		NC_000003.10:g.(?_ 60226127)_(6026735 2_?)del	NCBI36 (hg18)		NC_000003.10	Chr3	60,226,127	60,267,352

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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