esv2763765
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:16
- Validation:Not tested
- Clinical Assertions: No
- Region Size:33,446
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 508 SVs from 77 studies. See in: genome view
Overlapping variant regions from other studies: 264 SVs from 52 studies. See in: genome view
Overlapping variant regions from other studies: 508 SVs from 77 studies. See in: genome view
Overlapping variant regions from other studies: 166 SVs from 20 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2763765 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 176,165,167 | 176,198,612 |
| esv2763765 | Remapped | Perfect | GRCh38.p12 | PATCHES | Second Pass | NW_019805488.1 | Chr3|NW_01 9805488.1 | 49,678 | 83,123 |
| esv2763765 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 175,882,955 | 175,916,400 |
| esv2763765 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 177,365,649 | 177,399,094 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv7028183 | copy number loss | SW_0338 | SNP array | SNP genotyping analysis | 27 |
| essv7028184 | copy number loss | SW_1023 | SNP array | SNP genotyping analysis | 51 |
| essv7028185 | copy number loss | SW_1431 | SNP array | SNP genotyping analysis | 30 |
| essv7028186 | copy number loss | SW_0088 | SNP array | SNP genotyping analysis | 31 |
| essv7028187 | copy number loss | SW_0701 | SNP array | SNP genotyping analysis | 38 |
| essv7028188 | copy number loss | SW_0822 | SNP array | SNP genotyping analysis | 46 |
| essv7028189 | copy number loss | SW_0844 | SNP array | SNP genotyping analysis | 31 |
| essv7028192 | copy number loss | SW_1028 | SNP array | SNP genotyping analysis | 47 |
| essv7028193 | copy number loss | SW_1253 | SNP array | SNP genotyping analysis | 31 |
| essv7028194 | copy number loss | SW_1342 | SNP array | SNP genotyping analysis | 28 |
| essv7028195 | copy number loss | SW_1345 | SNP array | SNP genotyping analysis | 41 |
| essv7028196 | copy number loss | SW_1413 | SNP array | SNP genotyping analysis | 35 |
| essv7028197 | copy number loss | SW_1452 | SNP array | SNP genotyping analysis | 40 |
| essv7028198 | copy number loss | SW_1220 | SNP array | SNP genotyping analysis | 28 |
| essv7028199 | copy number loss | SW_1405 | SNP array | SNP genotyping analysis | 39 |
| essv7028200 | copy number loss | SW_1411 | SNP array | SNP genotyping analysis | 23 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv7028183 | Remapped | Perfect | NW_019805488.1:g.( ?_49678)_(81202_?) del | GRCh38.p12 | Second Pass | NW_019805488.1 | Chr3|NW_01 9805488.1 | 49,678 | 81,202 |
| essv7028184 | Remapped | Perfect | NW_019805488.1:g.( ?_49678)_(81202_?) del | GRCh38.p12 | Second Pass | NW_019805488.1 | Chr3|NW_01 9805488.1 | 49,678 | 81,202 |
| essv7028185 | Remapped | Perfect | NW_019805488.1:g.( ?_49678)_(81202_?) del | GRCh38.p12 | Second Pass | NW_019805488.1 | Chr3|NW_01 9805488.1 | 49,678 | 81,202 |
| essv7028186 | Remapped | Perfect | NW_019805488.1:g.( ?_54782)_(81202_?) del | GRCh38.p12 | Second Pass | NW_019805488.1 | Chr3|NW_01 9805488.1 | 54,782 | 81,202 |
| essv7028187 | Remapped | Perfect | NW_019805488.1:g.( ?_54782)_(81202_?) del | GRCh38.p12 | Second Pass | NW_019805488.1 | Chr3|NW_01 9805488.1 | 54,782 | 81,202 |
| essv7028188 | Remapped | Perfect | NW_019805488.1:g.( ?_54782)_(81202_?) del | GRCh38.p12 | Second Pass | NW_019805488.1 | Chr3|NW_01 9805488.1 | 54,782 | 81,202 |
| essv7028189 | Remapped | Perfect | NW_019805488.1:g.( ?_54782)_(81202_?) del | GRCh38.p12 | Second Pass | NW_019805488.1 | Chr3|NW_01 9805488.1 | 54,782 | 81,202 |
| essv7028192 | Remapped | Perfect | NW_019805488.1:g.( ?_54782)_(81202_?) del | GRCh38.p12 | Second Pass | NW_019805488.1 | Chr3|NW_01 9805488.1 | 54,782 | 81,202 |
| essv7028193 | Remapped | Perfect | NW_019805488.1:g.( ?_54782)_(81202_?) del | GRCh38.p12 | Second Pass | NW_019805488.1 | Chr3|NW_01 9805488.1 | 54,782 | 81,202 |
| essv7028194 | Remapped | Perfect | NW_019805488.1:g.( ?_54782)_(81202_?) del | GRCh38.p12 | Second Pass | NW_019805488.1 | Chr3|NW_01 9805488.1 | 54,782 | 81,202 |
| essv7028195 | Remapped | Perfect | NW_019805488.1:g.( ?_54782)_(81202_?) del | GRCh38.p12 | Second Pass | NW_019805488.1 | Chr3|NW_01 9805488.1 | 54,782 | 81,202 |
| essv7028196 | Remapped | Perfect | NW_019805488.1:g.( ?_54782)_(81202_?) del | GRCh38.p12 | Second Pass | NW_019805488.1 | Chr3|NW_01 9805488.1 | 54,782 | 81,202 |
| essv7028197 | Remapped | Perfect | NW_019805488.1:g.( ?_54782)_(81202_?) del | GRCh38.p12 | Second Pass | NW_019805488.1 | Chr3|NW_01 9805488.1 | 54,782 | 81,202 |
| essv7028198 | Remapped | Perfect | NW_019805488.1:g.( ?_54782)_(83123_?) del | GRCh38.p12 | Second Pass | NW_019805488.1 | Chr3|NW_01 9805488.1 | 54,782 | 83,123 |
| essv7028199 | Remapped | Perfect | NW_019805488.1:g.( ?_54782)_(83123_?) del | GRCh38.p12 | Second Pass | NW_019805488.1 | Chr3|NW_01 9805488.1 | 54,782 | 83,123 |
| essv7028200 | Remapped | Perfect | NW_019805488.1:g.( ?_54782)_(83123_?) del | GRCh38.p12 | Second Pass | NW_019805488.1 | Chr3|NW_01 9805488.1 | 54,782 | 83,123 |
| essv7028183 | Remapped | Perfect | NC_000003.12:g.(?_ 176165167)_(176196 691_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 176,165,167 | 176,196,691 |
| essv7028184 | Remapped | Perfect | NC_000003.12:g.(?_ 176165167)_(176196 691_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 176,165,167 | 176,196,691 |
| essv7028185 | Remapped | Perfect | NC_000003.12:g.(?_ 176165167)_(176196 691_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 176,165,167 | 176,196,691 |
| essv7028186 | Remapped | Perfect | NC_000003.12:g.(?_ 176170271)_(176196 691_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 176,170,271 | 176,196,691 |
| essv7028187 | Remapped | Perfect | NC_000003.12:g.(?_ 176170271)_(176196 691_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 176,170,271 | 176,196,691 |
| essv7028188 | Remapped | Perfect | NC_000003.12:g.(?_ 176170271)_(176196 691_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 176,170,271 | 176,196,691 |
| essv7028189 | Remapped | Perfect | NC_000003.12:g.(?_ 176170271)_(176196 691_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 176,170,271 | 176,196,691 |
| essv7028192 | Remapped | Perfect | NC_000003.12:g.(?_ 176170271)_(176196 691_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 176,170,271 | 176,196,691 |
| essv7028193 | Remapped | Perfect | NC_000003.12:g.(?_ 176170271)_(176196 691_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 176,170,271 | 176,196,691 |
| essv7028194 | Remapped | Perfect | NC_000003.12:g.(?_ 176170271)_(176196 691_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 176,170,271 | 176,196,691 |
| essv7028195 | Remapped | Perfect | NC_000003.12:g.(?_ 176170271)_(176196 691_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 176,170,271 | 176,196,691 |
| essv7028196 | Remapped | Perfect | NC_000003.12:g.(?_ 176170271)_(176196 691_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 176,170,271 | 176,196,691 |
| essv7028197 | Remapped | Perfect | NC_000003.12:g.(?_ 176170271)_(176196 691_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 176,170,271 | 176,196,691 |
| essv7028198 | Remapped | Perfect | NC_000003.12:g.(?_ 176170271)_(176198 612_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 176,170,271 | 176,198,612 |
| essv7028199 | Remapped | Perfect | NC_000003.12:g.(?_ 176170271)_(176198 612_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 176,170,271 | 176,198,612 |
| essv7028200 | Remapped | Perfect | NC_000003.12:g.(?_ 176170271)_(176198 612_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 176,170,271 | 176,198,612 |
| essv7028183 | Remapped | Perfect | NC_000003.11:g.(?_ 175882955)_(175914 479_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 175,882,955 | 175,914,479 |
| essv7028184 | Remapped | Perfect | NC_000003.11:g.(?_ 175882955)_(175914 479_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 175,882,955 | 175,914,479 |
| essv7028185 | Remapped | Perfect | NC_000003.11:g.(?_ 175882955)_(175914 479_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 175,882,955 | 175,914,479 |
| essv7028186 | Remapped | Perfect | NC_000003.11:g.(?_ 175888059)_(175914 479_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 175,888,059 | 175,914,479 |
| essv7028187 | Remapped | Perfect | NC_000003.11:g.(?_ 175888059)_(175914 479_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 175,888,059 | 175,914,479 |
| essv7028188 | Remapped | Perfect | NC_000003.11:g.(?_ 175888059)_(175914 479_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 175,888,059 | 175,914,479 |
| essv7028189 | Remapped | Perfect | NC_000003.11:g.(?_ 175888059)_(175914 479_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 175,888,059 | 175,914,479 |
| essv7028192 | Remapped | Perfect | NC_000003.11:g.(?_ 175888059)_(175914 479_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 175,888,059 | 175,914,479 |
| essv7028193 | Remapped | Perfect | NC_000003.11:g.(?_ 175888059)_(175914 479_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 175,888,059 | 175,914,479 |
| essv7028194 | Remapped | Perfect | NC_000003.11:g.(?_ 175888059)_(175914 479_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 175,888,059 | 175,914,479 |
| essv7028195 | Remapped | Perfect | NC_000003.11:g.(?_ 175888059)_(175914 479_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 175,888,059 | 175,914,479 |
| essv7028196 | Remapped | Perfect | NC_000003.11:g.(?_ 175888059)_(175914 479_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 175,888,059 | 175,914,479 |
| essv7028197 | Remapped | Perfect | NC_000003.11:g.(?_ 175888059)_(175914 479_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 175,888,059 | 175,914,479 |
| essv7028198 | Remapped | Perfect | NC_000003.11:g.(?_ 175888059)_(175916 400_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 175,888,059 | 175,916,400 |
| essv7028199 | Remapped | Perfect | NC_000003.11:g.(?_ 175888059)_(175916 400_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 175,888,059 | 175,916,400 |
| essv7028200 | Remapped | Perfect | NC_000003.11:g.(?_ 175888059)_(175916 400_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 175,888,059 | 175,916,400 |
| essv7028183 | Submitted genomic | NC_000003.10:g.(?_ 177365649)_(177397 173_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 177,365,649 | 177,397,173 | ||
| essv7028184 | Submitted genomic | NC_000003.10:g.(?_ 177365649)_(177397 173_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 177,365,649 | 177,397,173 | ||
| essv7028185 | Submitted genomic | NC_000003.10:g.(?_ 177365649)_(177397 173_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 177,365,649 | 177,397,173 | ||
| essv7028186 | Submitted genomic | NC_000003.10:g.(?_ 177370753)_(177397 173_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 177,370,753 | 177,397,173 | ||
| essv7028187 | Submitted genomic | NC_000003.10:g.(?_ 177370753)_(177397 173_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 177,370,753 | 177,397,173 | ||
| essv7028188 | Submitted genomic | NC_000003.10:g.(?_ 177370753)_(177397 173_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 177,370,753 | 177,397,173 | ||
| essv7028189 | Submitted genomic | NC_000003.10:g.(?_ 177370753)_(177397 173_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 177,370,753 | 177,397,173 | ||
| essv7028192 | Submitted genomic | NC_000003.10:g.(?_ 177370753)_(177397 173_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 177,370,753 | 177,397,173 | ||
| essv7028193 | Submitted genomic | NC_000003.10:g.(?_ 177370753)_(177397 173_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 177,370,753 | 177,397,173 | ||
| essv7028194 | Submitted genomic | NC_000003.10:g.(?_ 177370753)_(177397 173_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 177,370,753 | 177,397,173 | ||
| essv7028195 | Submitted genomic | NC_000003.10:g.(?_ 177370753)_(177397 173_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 177,370,753 | 177,397,173 | ||
| essv7028196 | Submitted genomic | NC_000003.10:g.(?_ 177370753)_(177397 173_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 177,370,753 | 177,397,173 | ||
| essv7028197 | Submitted genomic | NC_000003.10:g.(?_ 177370753)_(177397 173_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 177,370,753 | 177,397,173 | ||
| essv7028198 | Submitted genomic | NC_000003.10:g.(?_ 177370753)_(177399 094_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 177,370,753 | 177,399,094 | ||
| essv7028199 | Submitted genomic | NC_000003.10:g.(?_ 177370753)_(177399 094_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 177,370,753 | 177,399,094 | ||
| essv7028200 | Submitted genomic | NC_000003.10:g.(?_ 177370753)_(177399 094_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 177,370,753 | 177,399,094 |