esv2763821
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:9
- Validation:Not tested
- Clinical Assertions: No
- Region Size:51,039
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 668 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 668 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 227 SVs from 22 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2763821 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 161,031,076 | 161,082,114 |
| esv2763821 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 161,952,228 | 162,003,266 |
| esv2763821 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 162,171,678 | 162,222,716 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv7030269 | copy number gain | SW_0031 | SNP array | SNP genotyping analysis | 32 |
| essv7030270 | copy number gain | SW_0060 | SNP array | SNP genotyping analysis | 39 |
| essv7030271 | copy number gain | SW_0089 | SNP array | SNP genotyping analysis | 47 |
| essv7030272 | copy number gain | SW_0632 | SNP array | SNP genotyping analysis | 50 |
| essv7030273 | copy number gain | SW_0648 | SNP array | SNP genotyping analysis | 41 |
| essv7030274 | copy number gain | SW_0651 | SNP array | SNP genotyping analysis | 47 |
| essv7030275 | copy number gain | SW_0675 | SNP array | SNP genotyping analysis | 35 |
| essv7030276 | copy number gain | SW_0800 | SNP array | SNP genotyping analysis | 41 |
| essv7030277 | copy number gain | SW_0837 | SNP array | SNP genotyping analysis | 23 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv7030269 | Remapped | Perfect | NC_000004.12:g.(?_ 161031076)_(161082 114_?)dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 161,031,076 | 161,082,114 |
| essv7030270 | Remapped | Perfect | NC_000004.12:g.(?_ 161031076)_(161082 114_?)dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 161,031,076 | 161,082,114 |
| essv7030271 | Remapped | Perfect | NC_000004.12:g.(?_ 161031076)_(161082 114_?)dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 161,031,076 | 161,082,114 |
| essv7030272 | Remapped | Perfect | NC_000004.12:g.(?_ 161031076)_(161082 114_?)dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 161,031,076 | 161,082,114 |
| essv7030273 | Remapped | Perfect | NC_000004.12:g.(?_ 161031076)_(161082 114_?)dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 161,031,076 | 161,082,114 |
| essv7030274 | Remapped | Perfect | NC_000004.12:g.(?_ 161031076)_(161082 114_?)dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 161,031,076 | 161,082,114 |
| essv7030275 | Remapped | Perfect | NC_000004.12:g.(?_ 161031076)_(161082 114_?)dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 161,031,076 | 161,082,114 |
| essv7030276 | Remapped | Perfect | NC_000004.12:g.(?_ 161031076)_(161082 114_?)dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 161,031,076 | 161,082,114 |
| essv7030277 | Remapped | Perfect | NC_000004.12:g.(?_ 161031076)_(161082 114_?)dup | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 161,031,076 | 161,082,114 |
| essv7030269 | Remapped | Perfect | NC_000004.11:g.(?_ 161952228)_(162003 266_?)dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 161,952,228 | 162,003,266 |
| essv7030270 | Remapped | Perfect | NC_000004.11:g.(?_ 161952228)_(162003 266_?)dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 161,952,228 | 162,003,266 |
| essv7030271 | Remapped | Perfect | NC_000004.11:g.(?_ 161952228)_(162003 266_?)dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 161,952,228 | 162,003,266 |
| essv7030272 | Remapped | Perfect | NC_000004.11:g.(?_ 161952228)_(162003 266_?)dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 161,952,228 | 162,003,266 |
| essv7030273 | Remapped | Perfect | NC_000004.11:g.(?_ 161952228)_(162003 266_?)dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 161,952,228 | 162,003,266 |
| essv7030274 | Remapped | Perfect | NC_000004.11:g.(?_ 161952228)_(162003 266_?)dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 161,952,228 | 162,003,266 |
| essv7030275 | Remapped | Perfect | NC_000004.11:g.(?_ 161952228)_(162003 266_?)dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 161,952,228 | 162,003,266 |
| essv7030276 | Remapped | Perfect | NC_000004.11:g.(?_ 161952228)_(162003 266_?)dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 161,952,228 | 162,003,266 |
| essv7030277 | Remapped | Perfect | NC_000004.11:g.(?_ 161952228)_(162003 266_?)dup | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 161,952,228 | 162,003,266 |
| essv7030269 | Submitted genomic | NC_000004.10:g.(?_ 162171678)_(162222 716_?)dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 162,171,678 | 162,222,716 | ||
| essv7030270 | Submitted genomic | NC_000004.10:g.(?_ 162171678)_(162222 716_?)dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 162,171,678 | 162,222,716 | ||
| essv7030271 | Submitted genomic | NC_000004.10:g.(?_ 162171678)_(162222 716_?)dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 162,171,678 | 162,222,716 | ||
| essv7030272 | Submitted genomic | NC_000004.10:g.(?_ 162171678)_(162222 716_?)dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 162,171,678 | 162,222,716 | ||
| essv7030273 | Submitted genomic | NC_000004.10:g.(?_ 162171678)_(162222 716_?)dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 162,171,678 | 162,222,716 | ||
| essv7030274 | Submitted genomic | NC_000004.10:g.(?_ 162171678)_(162222 716_?)dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 162,171,678 | 162,222,716 | ||
| essv7030275 | Submitted genomic | NC_000004.10:g.(?_ 162171678)_(162222 716_?)dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 162,171,678 | 162,222,716 | ||
| essv7030276 | Submitted genomic | NC_000004.10:g.(?_ 162171678)_(162222 716_?)dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 162,171,678 | 162,222,716 | ||
| essv7030277 | Submitted genomic | NC_000004.10:g.(?_ 162171678)_(162222 716_?)dup | NCBI36 (hg18) | NC_000004.10 | Chr4 | 162,171,678 | 162,222,716 |