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dbVar

Database of genomic structural variation

esv2763858

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:3,052

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 149 SVs from 39 studies. See in: genome view

Remapped(Score: Perfect):30,012,663-30,015,714

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2763858	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	30,012,663	30,015,714
esv2763858	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000001.10	Chr1	30,485,510	30,488,561
esv2763858	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000001.9	Chr1	30,258,097	30,261,148

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv7022743	copy number loss	SW_0031	SNP array	SNP genotyping analysis	32
essv7022854	copy number loss	SW_0593	SNP array	SNP genotyping analysis	23
essv7022966	copy number loss	SW_1137	SNP array	SNP genotyping analysis	35

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv7022743	Remapped	Perfect	NC_000001.11:g.(?_ 30012663)_(3001571 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	30,012,663	30,015,714
essv7022854	Remapped	Perfect	NC_000001.11:g.(?_ 30012663)_(3001571 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	30,012,663	30,015,714
essv7022966	Remapped	Perfect	NC_000001.11:g.(?_ 30012663)_(3001571 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	30,012,663	30,015,714
essv7022743	Remapped	Perfect	NC_000001.10:g.(?_ 30485510)_(3048856 1_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	30,485,510	30,488,561
essv7022854	Remapped	Perfect	NC_000001.10:g.(?_ 30485510)_(3048856 1_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	30,485,510	30,488,561
essv7022966	Remapped	Perfect	NC_000001.10:g.(?_ 30485510)_(3048856 1_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	30,485,510	30,488,561
essv7022743	Submitted genomic		NC_000001.9:g.(?_3 0258097)_(30261148 _?)del	NCBI36 (hg18)		NC_000001.9	Chr1	30,258,097	30,261,148
essv7022854	Submitted genomic		NC_000001.9:g.(?_3 0258097)_(30261148 _?)del	NCBI36 (hg18)		NC_000001.9	Chr1	30,258,097	30,261,148
essv7022966	Submitted genomic		NC_000001.9:g.(?_3 0258097)_(30261148 _?)del	NCBI36 (hg18)		NC_000001.9	Chr1	30,258,097	30,261,148

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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