esv2763886
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:24
- Validation:Not tested
- Clinical Assertions: No
- Region Size:41,722
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 609 SVs from 72 studies. See in: genome view
Overlapping variant regions from other studies: 609 SVs from 72 studies. See in: genome view
Overlapping variant regions from other studies: 261 SVs from 17 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2763886 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 7,168,793 | 7,210,514 |
| esv2763886 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 7,168,906 | 7,210,627 |
| esv2763886 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 7,221,906 | 7,263,627 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv7030607 | copy number loss | SW_1317 | SNP array | SNP genotyping analysis | 24 |
| essv7030608 | copy number loss | SW_1340 | SNP array | SNP genotyping analysis | 41 |
| essv7030609 | copy number loss | SW_1469 | SNP array | SNP genotyping analysis | 43 |
| essv7030610 | copy number loss | SW_0061 | SNP array | SNP genotyping analysis | 38 |
| essv7030611 | copy number loss | SW_0216 | SNP array | SNP genotyping analysis | 39 |
| essv7030613 | copy number loss | SW_0604 | SNP array | SNP genotyping analysis | 48 |
| essv7030614 | copy number loss | SW_0623 | SNP array | SNP genotyping analysis | 40 |
| essv7030615 | copy number loss | SW_0646 | SNP array | SNP genotyping analysis | 38 |
| essv7030616 | copy number loss | SW_0775 | SNP array | SNP genotyping analysis | 68 |
| essv7030617 | copy number loss | SW_0805 | SNP array | SNP genotyping analysis | 42 |
| essv7030618 | copy number loss | SW_0871 | SNP array | SNP genotyping analysis | 29 |
| essv7030619 | copy number loss | SW_0891 | SNP array | SNP genotyping analysis | 34 |
| essv7030620 | copy number loss | SW_1119 | SNP array | SNP genotyping analysis | 41 |
| essv7030621 | copy number loss | SW_1157 | SNP array | SNP genotyping analysis | 23 |
| essv7030622 | copy number loss | SW_1193 | SNP array | SNP genotyping analysis | 39 |
| essv7030624 | copy number loss | SW_1195 | SNP array | SNP genotyping analysis | 22 |
| essv7030625 | copy number loss | SW_1301 | SNP array | SNP genotyping analysis | 31 |
| essv7030626 | copy number loss | SW_1349 | SNP array | SNP genotyping analysis | 28 |
| essv7030627 | copy number loss | SW_1427 | SNP array | SNP genotyping analysis | 31 |
| essv7030628 | copy number loss | SW_1505 | SNP array | SNP genotyping analysis | 24 |
| essv7030629 | copy number loss | SW_1020 | SNP array | SNP genotyping analysis | 32 |
| essv7030630 | copy number loss | SW_1127 | SNP array | SNP genotyping analysis | 34 |
| essv7030631 | copy number loss | SW_1108 | SNP array | SNP genotyping analysis | 29 |
| essv7030632 | copy number loss | SW_1286 | SNP array | SNP genotyping analysis | 23 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv7030607 | Remapped | Perfect | NC_000005.10:g.(?_ 7168793)_(7189812_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 7,168,793 | 7,189,812 |
| essv7030608 | Remapped | Perfect | NC_000005.10:g.(?_ 7168793)_(7189812_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 7,168,793 | 7,189,812 |
| essv7030609 | Remapped | Perfect | NC_000005.10:g.(?_ 7168793)_(7189812_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 7,168,793 | 7,189,812 |
| essv7030610 | Remapped | Perfect | NC_000005.10:g.(?_ 7177225)_(7189812_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 7,177,225 | 7,189,812 |
| essv7030611 | Remapped | Perfect | NC_000005.10:g.(?_ 7177225)_(7189812_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 7,177,225 | 7,189,812 |
| essv7030613 | Remapped | Perfect | NC_000005.10:g.(?_ 7177225)_(7189812_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 7,177,225 | 7,189,812 |
| essv7030614 | Remapped | Perfect | NC_000005.10:g.(?_ 7177225)_(7189812_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 7,177,225 | 7,189,812 |
| essv7030615 | Remapped | Perfect | NC_000005.10:g.(?_ 7177225)_(7189812_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 7,177,225 | 7,189,812 |
| essv7030616 | Remapped | Perfect | NC_000005.10:g.(?_ 7177225)_(7189812_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 7,177,225 | 7,189,812 |
| essv7030617 | Remapped | Perfect | NC_000005.10:g.(?_ 7177225)_(7189812_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 7,177,225 | 7,189,812 |
| essv7030618 | Remapped | Perfect | NC_000005.10:g.(?_ 7177225)_(7189812_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 7,177,225 | 7,189,812 |
| essv7030619 | Remapped | Perfect | NC_000005.10:g.(?_ 7177225)_(7189812_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 7,177,225 | 7,189,812 |
| essv7030620 | Remapped | Perfect | NC_000005.10:g.(?_ 7177225)_(7189812_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 7,177,225 | 7,189,812 |
| essv7030621 | Remapped | Perfect | NC_000005.10:g.(?_ 7177225)_(7189812_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 7,177,225 | 7,189,812 |
| essv7030622 | Remapped | Perfect | NC_000005.10:g.(?_ 7177225)_(7189812_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 7,177,225 | 7,189,812 |
| essv7030624 | Remapped | Perfect | NC_000005.10:g.(?_ 7177225)_(7189812_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 7,177,225 | 7,189,812 |
| essv7030625 | Remapped | Perfect | NC_000005.10:g.(?_ 7177225)_(7189812_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 7,177,225 | 7,189,812 |
| essv7030626 | Remapped | Perfect | NC_000005.10:g.(?_ 7177225)_(7189812_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 7,177,225 | 7,189,812 |
| essv7030627 | Remapped | Perfect | NC_000005.10:g.(?_ 7177225)_(7189812_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 7,177,225 | 7,189,812 |
| essv7030628 | Remapped | Perfect | NC_000005.10:g.(?_ 7177225)_(7189812_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 7,177,225 | 7,189,812 |
| essv7030629 | Remapped | Perfect | NC_000005.10:g.(?_ 7177225)_(7202707_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 7,177,225 | 7,202,707 |
| essv7030630 | Remapped | Perfect | NC_000005.10:g.(?_ 7177225)_(7202707_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 7,177,225 | 7,202,707 |
| essv7030631 | Remapped | Perfect | NC_000005.10:g.(?_ 7177225)_(7210514_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 7,177,225 | 7,210,514 |
| essv7030632 | Remapped | Perfect | NC_000005.10:g.(?_ 7177225)_(7210514_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 7,177,225 | 7,210,514 |
| essv7030607 | Remapped | Perfect | NC_000005.9:g.(?_7 168906)_(7189925_? )del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 7,168,906 | 7,189,925 |
| essv7030608 | Remapped | Perfect | NC_000005.9:g.(?_7 168906)_(7189925_? )del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 7,168,906 | 7,189,925 |
| essv7030609 | Remapped | Perfect | NC_000005.9:g.(?_7 168906)_(7189925_? )del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 7,168,906 | 7,189,925 |
| essv7030610 | Remapped | Perfect | NC_000005.9:g.(?_7 177338)_(7189925_? )del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 7,177,338 | 7,189,925 |
| essv7030611 | Remapped | Perfect | NC_000005.9:g.(?_7 177338)_(7189925_? )del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 7,177,338 | 7,189,925 |
| essv7030613 | Remapped | Perfect | NC_000005.9:g.(?_7 177338)_(7189925_? )del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 7,177,338 | 7,189,925 |
| essv7030614 | Remapped | Perfect | NC_000005.9:g.(?_7 177338)_(7189925_? )del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 7,177,338 | 7,189,925 |
| essv7030615 | Remapped | Perfect | NC_000005.9:g.(?_7 177338)_(7189925_? )del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 7,177,338 | 7,189,925 |
| essv7030616 | Remapped | Perfect | NC_000005.9:g.(?_7 177338)_(7189925_? )del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 7,177,338 | 7,189,925 |
| essv7030617 | Remapped | Perfect | NC_000005.9:g.(?_7 177338)_(7189925_? )del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 7,177,338 | 7,189,925 |
| essv7030618 | Remapped | Perfect | NC_000005.9:g.(?_7 177338)_(7189925_? )del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 7,177,338 | 7,189,925 |
| essv7030619 | Remapped | Perfect | NC_000005.9:g.(?_7 177338)_(7189925_? )del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 7,177,338 | 7,189,925 |
| essv7030620 | Remapped | Perfect | NC_000005.9:g.(?_7 177338)_(7189925_? )del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 7,177,338 | 7,189,925 |
| essv7030621 | Remapped | Perfect | NC_000005.9:g.(?_7 177338)_(7189925_? )del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 7,177,338 | 7,189,925 |
| essv7030622 | Remapped | Perfect | NC_000005.9:g.(?_7 177338)_(7189925_? )del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 7,177,338 | 7,189,925 |
| essv7030624 | Remapped | Perfect | NC_000005.9:g.(?_7 177338)_(7189925_? )del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 7,177,338 | 7,189,925 |
| essv7030625 | Remapped | Perfect | NC_000005.9:g.(?_7 177338)_(7189925_? )del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 7,177,338 | 7,189,925 |
| essv7030626 | Remapped | Perfect | NC_000005.9:g.(?_7 177338)_(7189925_? )del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 7,177,338 | 7,189,925 |
| essv7030627 | Remapped | Perfect | NC_000005.9:g.(?_7 177338)_(7189925_? )del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 7,177,338 | 7,189,925 |
| essv7030628 | Remapped | Perfect | NC_000005.9:g.(?_7 177338)_(7189925_? )del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 7,177,338 | 7,189,925 |
| essv7030629 | Remapped | Perfect | NC_000005.9:g.(?_7 177338)_(7202820_? )del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 7,177,338 | 7,202,820 |
| essv7030630 | Remapped | Perfect | NC_000005.9:g.(?_7 177338)_(7202820_? )del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 7,177,338 | 7,202,820 |
| essv7030631 | Remapped | Perfect | NC_000005.9:g.(?_7 177338)_(7210627_? )del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 7,177,338 | 7,210,627 |
| essv7030632 | Remapped | Perfect | NC_000005.9:g.(?_7 177338)_(7210627_? )del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 7,177,338 | 7,210,627 |
| essv7030607 | Submitted genomic | NC_000005.8:g.(?_7 221906)_(7242925_? )del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 7,221,906 | 7,242,925 | ||
| essv7030608 | Submitted genomic | NC_000005.8:g.(?_7 221906)_(7242925_? )del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 7,221,906 | 7,242,925 | ||
| essv7030609 | Submitted genomic | NC_000005.8:g.(?_7 221906)_(7242925_? )del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 7,221,906 | 7,242,925 | ||
| essv7030610 | Submitted genomic | NC_000005.8:g.(?_7 230338)_(7242925_? )del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 7,230,338 | 7,242,925 | ||
| essv7030611 | Submitted genomic | NC_000005.8:g.(?_7 230338)_(7242925_? )del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 7,230,338 | 7,242,925 | ||
| essv7030613 | Submitted genomic | NC_000005.8:g.(?_7 230338)_(7242925_? )del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 7,230,338 | 7,242,925 | ||
| essv7030614 | Submitted genomic | NC_000005.8:g.(?_7 230338)_(7242925_? )del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 7,230,338 | 7,242,925 | ||
| essv7030615 | Submitted genomic | NC_000005.8:g.(?_7 230338)_(7242925_? )del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 7,230,338 | 7,242,925 | ||
| essv7030616 | Submitted genomic | NC_000005.8:g.(?_7 230338)_(7242925_? )del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 7,230,338 | 7,242,925 | ||
| essv7030617 | Submitted genomic | NC_000005.8:g.(?_7 230338)_(7242925_? )del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 7,230,338 | 7,242,925 | ||
| essv7030618 | Submitted genomic | NC_000005.8:g.(?_7 230338)_(7242925_? )del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 7,230,338 | 7,242,925 | ||
| essv7030619 | Submitted genomic | NC_000005.8:g.(?_7 230338)_(7242925_? )del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 7,230,338 | 7,242,925 | ||
| essv7030620 | Submitted genomic | NC_000005.8:g.(?_7 230338)_(7242925_? )del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 7,230,338 | 7,242,925 | ||
| essv7030621 | Submitted genomic | NC_000005.8:g.(?_7 230338)_(7242925_? )del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 7,230,338 | 7,242,925 | ||
| essv7030622 | Submitted genomic | NC_000005.8:g.(?_7 230338)_(7242925_? )del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 7,230,338 | 7,242,925 | ||
| essv7030624 | Submitted genomic | NC_000005.8:g.(?_7 230338)_(7242925_? )del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 7,230,338 | 7,242,925 | ||
| essv7030625 | Submitted genomic | NC_000005.8:g.(?_7 230338)_(7242925_? )del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 7,230,338 | 7,242,925 | ||
| essv7030626 | Submitted genomic | NC_000005.8:g.(?_7 230338)_(7242925_? )del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 7,230,338 | 7,242,925 | ||
| essv7030627 | Submitted genomic | NC_000005.8:g.(?_7 230338)_(7242925_? )del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 7,230,338 | 7,242,925 | ||
| essv7030628 | Submitted genomic | NC_000005.8:g.(?_7 230338)_(7242925_? )del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 7,230,338 | 7,242,925 | ||
| essv7030629 | Submitted genomic | NC_000005.8:g.(?_7 230338)_(7255820_? )del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 7,230,338 | 7,255,820 | ||
| essv7030630 | Submitted genomic | NC_000005.8:g.(?_7 230338)_(7255820_? )del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 7,230,338 | 7,255,820 | ||
| essv7030631 | Submitted genomic | NC_000005.8:g.(?_7 230338)_(7263627_? )del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 7,230,338 | 7,263,627 | ||
| essv7030632 | Submitted genomic | NC_000005.8:g.(?_7 230338)_(7263627_? )del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 7,230,338 | 7,263,627 |