esv2763936
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:10
- Validation:Not tested
- Clinical Assertions: No
- Region Size:216,834
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2143 SVs from 87 studies. See in: genome view
Overlapping variant regions from other studies: 2143 SVs from 87 studies. See in: genome view
Overlapping variant regions from other studies: 545 SVs from 25 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2763936 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 66,432,051 | 66,648,884 |
| esv2763936 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 68,191,809 | 68,408,642 |
| esv2763936 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 67,861,815 | 68,078,648 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv6995068 | copy number loss | SW_1415 | SNP array | SNP genotyping analysis | 24 |
| essv6995069 | copy number loss | SW_1294 | SNP array | SNP genotyping analysis | 32 |
| essv6995070 | copy number loss | SW_1046 | SNP array | SNP genotyping analysis | 32 |
| essv6995071 | copy number loss | SW_0647 | SNP array | SNP genotyping analysis | 38 |
| essv6995072 | copy number loss | SW_0202 | SNP array | SNP genotyping analysis | 25 |
| essv6995073 | copy number loss | SW_0255 | SNP array | SNP genotyping analysis | 31 |
| essv6995074 | copy number loss | SW_0187 | SNP array | SNP genotyping analysis | 30 |
| essv6995075 | copy number loss | SW_1187 | SNP array | SNP genotyping analysis | 27 |
| essv6995076 | copy number loss | SW_1381 | SNP array | SNP genotyping analysis | 32 |
| essv6995079 | copy number loss | SW_0578 | SNP array | SNP genotyping analysis | 38 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv6995068 | Remapped | Perfect | NC_000010.11:g.(?_ 66432051)_(6658790 5_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 66,432,051 | 66,587,905 |
| essv6995069 | Remapped | Perfect | NC_000010.11:g.(?_ 66514286)_(6661604 2_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 66,514,286 | 66,616,042 |
| essv6995070 | Remapped | Perfect | NC_000010.11:g.(?_ 66523787)_(6656942 4_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 66,523,787 | 66,569,424 |
| essv6995071 | Remapped | Perfect | NC_000010.11:g.(?_ 66523787)_(6657094 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 66,523,787 | 66,570,946 |
| essv6995072 | Remapped | Perfect | NC_000010.11:g.(?_ 66532610)_(6659669 7_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 66,532,610 | 66,596,697 |
| essv6995073 | Remapped | Perfect | NC_000010.11:g.(?_ 66540121)_(6655806 9_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 66,540,121 | 66,558,069 |
| essv6995074 | Remapped | Perfect | NC_000010.11:g.(?_ 66586997)_(6663690 5_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 66,586,997 | 66,636,905 |
| essv6995075 | Remapped | Perfect | NC_000010.11:g.(?_ 66589183)_(6661604 2_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 66,589,183 | 66,616,042 |
| essv6995076 | Remapped | Perfect | NC_000010.11:g.(?_ 66590316)_(6661432 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 66,590,316 | 66,614,326 |
| essv6995079 | Remapped | Perfect | NC_000010.11:g.(?_ 66620652)_(6664888 4_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 66,620,652 | 66,648,884 |
| essv6995068 | Remapped | Perfect | NC_000010.10:g.(?_ 68191809)_(6834766 3_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 68,191,809 | 68,347,663 |
| essv6995069 | Remapped | Perfect | NC_000010.10:g.(?_ 68274044)_(6837580 0_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 68,274,044 | 68,375,800 |
| essv6995070 | Remapped | Perfect | NC_000010.10:g.(?_ 68283545)_(6832918 2_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 68,283,545 | 68,329,182 |
| essv6995071 | Remapped | Perfect | NC_000010.10:g.(?_ 68283545)_(6833070 4_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 68,283,545 | 68,330,704 |
| essv6995072 | Remapped | Perfect | NC_000010.10:g.(?_ 68292368)_(6835645 5_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 68,292,368 | 68,356,455 |
| essv6995073 | Remapped | Perfect | NC_000010.10:g.(?_ 68299879)_(6831782 7_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 68,299,879 | 68,317,827 |
| essv6995074 | Remapped | Perfect | NC_000010.10:g.(?_ 68346755)_(6839666 3_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 68,346,755 | 68,396,663 |
| essv6995075 | Remapped | Perfect | NC_000010.10:g.(?_ 68348941)_(6837580 0_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 68,348,941 | 68,375,800 |
| essv6995076 | Remapped | Perfect | NC_000010.10:g.(?_ 68350074)_(6837408 4_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 68,350,074 | 68,374,084 |
| essv6995079 | Remapped | Perfect | NC_000010.10:g.(?_ 68380410)_(6840864 2_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 68,380,410 | 68,408,642 |
| essv6995068 | Submitted genomic | NC_000010.9:g.(?_6 7861815)_(68017669 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 67,861,815 | 68,017,669 | ||
| essv6995069 | Submitted genomic | NC_000010.9:g.(?_6 7944050)_(68045806 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 67,944,050 | 68,045,806 | ||
| essv6995070 | Submitted genomic | NC_000010.9:g.(?_6 7953551)_(67999188 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 67,953,551 | 67,999,188 | ||
| essv6995071 | Submitted genomic | NC_000010.9:g.(?_6 7953551)_(68000710 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 67,953,551 | 68,000,710 | ||
| essv6995072 | Submitted genomic | NC_000010.9:g.(?_6 7962374)_(68026461 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 67,962,374 | 68,026,461 | ||
| essv6995073 | Submitted genomic | NC_000010.9:g.(?_6 7969885)_(67987833 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 67,969,885 | 67,987,833 | ||
| essv6995074 | Submitted genomic | NC_000010.9:g.(?_6 8016761)_(68066669 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 68,016,761 | 68,066,669 | ||
| essv6995075 | Submitted genomic | NC_000010.9:g.(?_6 8018947)_(68045806 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 68,018,947 | 68,045,806 | ||
| essv6995076 | Submitted genomic | NC_000010.9:g.(?_6 8020080)_(68044090 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 68,020,080 | 68,044,090 | ||
| essv6995079 | Submitted genomic | NC_000010.9:g.(?_6 8050416)_(68078648 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 68,050,416 | 68,078,648 |