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dbVar

Database of genomic structural variation

esv2763993

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:21,261

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 250 SVs from 47 studies. See in: genome view

Remapped(Score: Perfect):8,925,113-8,946,373

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2763993	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	8,925,113	8,946,373
esv2763993	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000006.11	Chr6	8,925,346	8,946,606
esv2763993	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000006.10	Chr6	8,870,345	8,891,605

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv7031884	copy number loss	SW_1438	SNP array	SNP genotyping analysis	34
essv7031885	copy number loss	SW_1472	SNP array	SNP genotyping analysis	39
essv7031886	copy number loss	SW_0861	SNP array	SNP genotyping analysis	44
essv7031887	copy number loss	SW_1318	SNP array	SNP genotyping analysis	38
essv7031888	copy number loss	SW_1428	SNP array	SNP genotyping analysis	37
essv7031889	copy number loss	SW_1535	SNP array	SNP genotyping analysis	24

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv7031884	Remapped	Perfect	NC_000006.12:g.(?_ 8925113)_(8932867_ ?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	8,925,113	8,932,867
essv7031885	Remapped	Perfect	NC_000006.12:g.(?_ 8925113)_(8946373_ ?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	8,925,113	8,946,373
essv7031886	Remapped	Perfect	NC_000006.12:g.(?_ 8927278)_(8932867_ ?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	8,927,278	8,932,867
essv7031887	Remapped	Perfect	NC_000006.12:g.(?_ 8927278)_(8932867_ ?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	8,927,278	8,932,867
essv7031888	Remapped	Perfect	NC_000006.12:g.(?_ 8927278)_(8934759_ ?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	8,927,278	8,934,759
essv7031889	Remapped	Perfect	NC_000006.12:g.(?_ 8927278)_(8946373_ ?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	8,927,278	8,946,373
essv7031884	Remapped	Perfect	NC_000006.11:g.(?_ 8925346)_(8933100_ ?)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	8,925,346	8,933,100
essv7031885	Remapped	Perfect	NC_000006.11:g.(?_ 8925346)_(8946606_ ?)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	8,925,346	8,946,606
essv7031886	Remapped	Perfect	NC_000006.11:g.(?_ 8927511)_(8933100_ ?)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	8,927,511	8,933,100
essv7031887	Remapped	Perfect	NC_000006.11:g.(?_ 8927511)_(8933100_ ?)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	8,927,511	8,933,100
essv7031888	Remapped	Perfect	NC_000006.11:g.(?_ 8927511)_(8934992_ ?)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	8,927,511	8,934,992
essv7031889	Remapped	Perfect	NC_000006.11:g.(?_ 8927511)_(8946606_ ?)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	8,927,511	8,946,606
essv7031884	Submitted genomic		NC_000006.10:g.(?_ 8870345)_(8878099_ ?)del	NCBI36 (hg18)		NC_000006.10	Chr6	8,870,345	8,878,099
essv7031885	Submitted genomic		NC_000006.10:g.(?_ 8870345)_(8891605_ ?)del	NCBI36 (hg18)		NC_000006.10	Chr6	8,870,345	8,891,605
essv7031886	Submitted genomic		NC_000006.10:g.(?_ 8872510)_(8878099_ ?)del	NCBI36 (hg18)		NC_000006.10	Chr6	8,872,510	8,878,099
essv7031887	Submitted genomic		NC_000006.10:g.(?_ 8872510)_(8878099_ ?)del	NCBI36 (hg18)		NC_000006.10	Chr6	8,872,510	8,878,099
essv7031888	Submitted genomic		NC_000006.10:g.(?_ 8872510)_(8879991_ ?)del	NCBI36 (hg18)		NC_000006.10	Chr6	8,872,510	8,879,991
essv7031889	Submitted genomic		NC_000006.10:g.(?_ 8872510)_(8891605_ ?)del	NCBI36 (hg18)		NC_000006.10	Chr6	8,872,510	8,891,605

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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