Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

esv2764009

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:15,872

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 220 SVs from 48 studies. See in: genome view

Remapped(Score: Perfect):10,752,523-10,768,394

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2764009	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000007.14	Chr7	10,752,523	10,768,394
esv2764009	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000007.13	Chr7	10,792,150	10,808,021
esv2764009	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000007.12	Chr7	10,758,675	10,774,546

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv7033383	copy number loss	SW_0099	SNP array	SNP genotyping analysis	38
essv7033384	copy number loss	SW_0270	SNP array	SNP genotyping analysis	25
essv7033385	copy number loss	SW_0341	SNP array	SNP genotyping analysis	25
essv7033386	copy number loss	SW_1028	SNP array	SNP genotyping analysis	47
essv7033387	copy number loss	SW_1105	SNP array	SNP genotyping analysis	49
essv7033388	copy number loss	SW_1240	SNP array	SNP genotyping analysis	35

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv7033383	Remapped	Perfect	NC_000007.14:g.(?_ 10752523)_(1076648 1_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	10,752,523	10,766,481
essv7033384	Remapped	Perfect	NC_000007.14:g.(?_ 10752523)_(1076648 1_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	10,752,523	10,766,481
essv7033385	Remapped	Perfect	NC_000007.14:g.(?_ 10752523)_(1076648 1_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	10,752,523	10,766,481
essv7033386	Remapped	Perfect	NC_000007.14:g.(?_ 10752523)_(1076648 1_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	10,752,523	10,766,481
essv7033387	Remapped	Perfect	NC_000007.14:g.(?_ 10752523)_(1076648 1_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	10,752,523	10,766,481
essv7033388	Remapped	Perfect	NC_000007.14:g.(?_ 10752523)_(1076839 4_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	10,752,523	10,768,394
essv7033383	Remapped	Perfect	NC_000007.13:g.(?_ 10792150)_(1080610 8_?)del	GRCh37.p13	First Pass	NC_000007.13	Chr7	10,792,150	10,806,108
essv7033384	Remapped	Perfect	NC_000007.13:g.(?_ 10792150)_(1080610 8_?)del	GRCh37.p13	First Pass	NC_000007.13	Chr7	10,792,150	10,806,108
essv7033385	Remapped	Perfect	NC_000007.13:g.(?_ 10792150)_(1080610 8_?)del	GRCh37.p13	First Pass	NC_000007.13	Chr7	10,792,150	10,806,108
essv7033386	Remapped	Perfect	NC_000007.13:g.(?_ 10792150)_(1080610 8_?)del	GRCh37.p13	First Pass	NC_000007.13	Chr7	10,792,150	10,806,108
essv7033387	Remapped	Perfect	NC_000007.13:g.(?_ 10792150)_(1080610 8_?)del	GRCh37.p13	First Pass	NC_000007.13	Chr7	10,792,150	10,806,108
essv7033388	Remapped	Perfect	NC_000007.13:g.(?_ 10792150)_(1080802 1_?)del	GRCh37.p13	First Pass	NC_000007.13	Chr7	10,792,150	10,808,021
essv7033383	Submitted genomic		NC_000007.12:g.(?_ 10758675)_(1077263 3_?)del	NCBI36 (hg18)		NC_000007.12	Chr7	10,758,675	10,772,633
essv7033384	Submitted genomic		NC_000007.12:g.(?_ 10758675)_(1077263 3_?)del	NCBI36 (hg18)		NC_000007.12	Chr7	10,758,675	10,772,633
essv7033385	Submitted genomic		NC_000007.12:g.(?_ 10758675)_(1077263 3_?)del	NCBI36 (hg18)		NC_000007.12	Chr7	10,758,675	10,772,633
essv7033386	Submitted genomic		NC_000007.12:g.(?_ 10758675)_(1077263 3_?)del	NCBI36 (hg18)		NC_000007.12	Chr7	10,758,675	10,772,633
essv7033387	Submitted genomic		NC_000007.12:g.(?_ 10758675)_(1077263 3_?)del	NCBI36 (hg18)		NC_000007.12	Chr7	10,758,675	10,772,633
essv7033388	Submitted genomic		NC_000007.12:g.(?_ 10758675)_(1077454 6_?)del	NCBI36 (hg18)		NC_000007.12	Chr7	10,758,675	10,774,546

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI