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dbVar

Database of genomic structural variation

esv2764142

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:172,580

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1081 SVs from 89 studies. See in: genome view

Remapped(Score: Perfect):30,419,944-30,592,523

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2764142	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000009.12	Chr9	30,419,944	30,592,523
esv2764142	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000009.11	Chr9	30,419,942	30,592,521
esv2764142	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000009.10	Chr9	30,409,942	30,582,521

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv6993874	copy number loss	SW_0146	SNP array	SNP genotyping analysis	48
essv6993875	copy number loss	SW_0076	SNP array	SNP genotyping analysis	46
essv6993876	copy number loss	SW_0857	SNP array	SNP genotyping analysis	33

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv6993874	Remapped	Perfect	NC_000009.12:g.(?_ 30419944)_(3056336 8_?)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	30,419,944	30,563,368
essv6993875	Remapped	Perfect	NC_000009.12:g.(?_ 30504351)_(3059252 3_?)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	30,504,351	30,592,523
essv6993876	Remapped	Perfect	NC_000009.12:g.(?_ 30546868)_(3059252 3_?)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	30,546,868	30,592,523
essv6993874	Remapped	Perfect	NC_000009.11:g.(?_ 30419942)_(3056336 6_?)del	GRCh37.p13	First Pass	NC_000009.11	Chr9	30,419,942	30,563,366
essv6993875	Remapped	Perfect	NC_000009.11:g.(?_ 30504349)_(3059252 1_?)del	GRCh37.p13	First Pass	NC_000009.11	Chr9	30,504,349	30,592,521
essv6993876	Remapped	Perfect	NC_000009.11:g.(?_ 30546866)_(3059252 1_?)del	GRCh37.p13	First Pass	NC_000009.11	Chr9	30,546,866	30,592,521
essv6993874	Submitted genomic		NC_000009.10:g.(?_ 30409942)_(3055336 6_?)del	NCBI36 (hg18)		NC_000009.10	Chr9	30,409,942	30,553,366
essv6993875	Submitted genomic		NC_000009.10:g.(?_ 30494349)_(3058252 1_?)del	NCBI36 (hg18)		NC_000009.10	Chr9	30,494,349	30,582,521
essv6993876	Submitted genomic		NC_000009.10:g.(?_ 30536866)_(3058252 1_?)del	NCBI36 (hg18)		NC_000009.10	Chr9	30,536,866	30,582,521

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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