esv2764152
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:9
- Validation:Not tested
- Clinical Assertions: No
- Region Size:364,817
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2013 SVs from 87 studies. See in: genome view
Overlapping variant regions from other studies: 2019 SVs from 88 studies. See in: genome view
Overlapping variant regions from other studies: 578 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2764152 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 28,433,222 | 28,798,038 |
| esv2764152 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 28,433,220 | 28,798,036 |
| esv2764152 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 28,423,220 | 28,788,036 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv6993861 | copy number loss | SW_1440 | SNP array | SNP genotyping analysis | 38 |
| essv6993862 | copy number loss | SW_0860 | SNP array | SNP genotyping analysis | 32 |
| essv6993863 | copy number loss | SW_1130 | SNP array | SNP genotyping analysis | 33 |
| essv6993864 | copy number loss | SW_1387 | SNP array | SNP genotyping analysis | 24 |
| essv6993865 | copy number loss | SW_0861 | SNP array | SNP genotyping analysis | 44 |
| essv6993866 | copy number loss | SW_1236 | SNP array | SNP genotyping analysis | 23 |
| essv6993868 | copy number loss | SW_0621 | SNP array | SNP genotyping analysis | 43 |
| essv6993869 | copy number loss | SW_0804 | SNP array | SNP genotyping analysis | 34 |
| essv6993870 | copy number loss | SW_0216 | SNP array | SNP genotyping analysis | 39 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv6993861 | Remapped | Perfect | NC_000009.12:g.(?_ 28433222)_(2853958 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 28,433,222 | 28,539,583 |
| essv6993862 | Remapped | Perfect | NC_000009.12:g.(?_ 28527188)_(2879803 8_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 28,527,188 | 28,798,038 |
| essv6993863 | Remapped | Perfect | NC_000009.12:g.(?_ 28550577)_(2859759 5_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 28,550,577 | 28,597,595 |
| essv6993864 | Remapped | Perfect | NC_000009.12:g.(?_ 28587776)_(2862065 5_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 28,587,776 | 28,620,655 |
| essv6993865 | Remapped | Perfect | NC_000009.12:g.(?_ 28596288)_(2871063 5_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 28,596,288 | 28,710,635 |
| essv6993866 | Remapped | Perfect | NC_000009.12:g.(?_ 28630541)_(2871584 0_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 28,630,541 | 28,715,840 |
| essv6993868 | Remapped | Perfect | NC_000009.12:g.(?_ 28653506)_(2871584 0_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 28,653,506 | 28,715,840 |
| essv6993869 | Remapped | Perfect | NC_000009.12:g.(?_ 28704899)_(2871584 0_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 28,704,899 | 28,715,840 |
| essv6993870 | Remapped | Perfect | NC_000009.12:g.(?_ 28708153)_(2871584 0_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 28,708,153 | 28,715,840 |
| essv6993861 | Remapped | Perfect | NC_000009.11:g.(?_ 28433220)_(2853958 1_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 28,433,220 | 28,539,581 |
| essv6993862 | Remapped | Perfect | NC_000009.11:g.(?_ 28527186)_(2879803 6_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 28,527,186 | 28,798,036 |
| essv6993863 | Remapped | Perfect | NC_000009.11:g.(?_ 28550575)_(2859759 3_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 28,550,575 | 28,597,593 |
| essv6993864 | Remapped | Perfect | NC_000009.11:g.(?_ 28587774)_(2862065 3_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 28,587,774 | 28,620,653 |
| essv6993865 | Remapped | Perfect | NC_000009.11:g.(?_ 28596286)_(2871063 3_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 28,596,286 | 28,710,633 |
| essv6993866 | Remapped | Perfect | NC_000009.11:g.(?_ 28630539)_(2871583 8_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 28,630,539 | 28,715,838 |
| essv6993868 | Remapped | Perfect | NC_000009.11:g.(?_ 28653504)_(2871583 8_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 28,653,504 | 28,715,838 |
| essv6993869 | Remapped | Perfect | NC_000009.11:g.(?_ 28704897)_(2871583 8_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 28,704,897 | 28,715,838 |
| essv6993870 | Remapped | Perfect | NC_000009.11:g.(?_ 28708151)_(2871583 8_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 28,708,151 | 28,715,838 |
| essv6993861 | Submitted genomic | NC_000009.10:g.(?_ 28423220)_(2852958 1_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 28,423,220 | 28,529,581 | ||
| essv6993862 | Submitted genomic | NC_000009.10:g.(?_ 28517186)_(2878803 6_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 28,517,186 | 28,788,036 | ||
| essv6993863 | Submitted genomic | NC_000009.10:g.(?_ 28540575)_(2858759 3_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 28,540,575 | 28,587,593 | ||
| essv6993864 | Submitted genomic | NC_000009.10:g.(?_ 28577774)_(2861065 3_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 28,577,774 | 28,610,653 | ||
| essv6993865 | Submitted genomic | NC_000009.10:g.(?_ 28586286)_(2870063 3_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 28,586,286 | 28,700,633 | ||
| essv6993866 | Submitted genomic | NC_000009.10:g.(?_ 28620539)_(2870583 8_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 28,620,539 | 28,705,838 | ||
| essv6993868 | Submitted genomic | NC_000009.10:g.(?_ 28643504)_(2870583 8_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 28,643,504 | 28,705,838 | ||
| essv6993869 | Submitted genomic | NC_000009.10:g.(?_ 28694897)_(2870583 8_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 28,694,897 | 28,705,838 | ||
| essv6993870 | Submitted genomic | NC_000009.10:g.(?_ 28698151)_(2870583 8_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 28,698,151 | 28,705,838 |