esv3635879

Organism: Homo sapiens

Study:estd214 (1000 Genomes Consortium Phase 3)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:31
Validation:Not tested
Clinical Assertions: No
Region Size:20,063

Publication(s):1000 Genomes Project Consortium et al. 2015

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1395 SVs from 82 studies. See in: genome view

Remapped(Score: Perfect):24,294,482-24,314,544

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
esv3635879	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
esv3635879	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000015.9	Chr15	24,539,629	24,559,691

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
essv15182728	copy number loss	SAMN00006341	Sequencing	Read depth and paired-end mapping	Heterozygous	2,683
essv15182729	copy number loss	SAMN00009163	Sequencing	Read depth and paired-end mapping	Heterozygous	2,929
essv15182730	copy number loss	SAMN00014429	Sequencing	Read depth and paired-end mapping	Heterozygous	2,569
essv15182731	copy number loss	SAMN00779966	Sequencing	Read depth and paired-end mapping	Heterozygous	3,189
essv15182732	copy number loss	SAMN01036816	Sequencing	Read depth and paired-end mapping	Heterozygous	3,086
essv15182733	copy number loss	SAMN00000419	Sequencing	Read depth and paired-end mapping	Heterozygous	2,622
essv15182734	copy number loss	SAMN00001634	Sequencing	Read depth and paired-end mapping	Heterozygous	2,781
essv15182735	copy number loss	SAMN00001688	Sequencing	Read depth and paired-end mapping	Heterozygous	3,391
essv15182736	copy number loss	SAMN00001694	Sequencing	Read depth and paired-end mapping	Heterozygous	2,488
essv15182737	copy number loss	SAMN00001117	Sequencing	Read depth and paired-end mapping	Heterozygous	4,071
essv15182738	copy number loss	SAMN00007797	Sequencing	Read depth and paired-end mapping	Heterozygous	2,620
essv15182739	copy number loss	SAMN00007801	Sequencing	Read depth and paired-end mapping	Heterozygous	2,595
essv15182740	copy number loss	SAMN00007953	Sequencing	Read depth and paired-end mapping	Heterozygous	2,763
essv15182741	copy number gain	SAMN00016966	Sequencing	Read depth and paired-end mapping	Heterozygous	2,448
essv15182742	copy number gain	SAMN00006362	Sequencing	Read depth and paired-end mapping	Heterozygous	2,917
essv15182743	copy number gain	SAMN00006534	Sequencing	Read depth and paired-end mapping	Heterozygous	2,800
essv15182744	copy number gain	SAMN00009130	Sequencing	Read depth and paired-end mapping	Heterozygous	2,749
essv15182745	copy number gain	SAMN00249880	Sequencing	Read depth and paired-end mapping	Heterozygous	2,835
essv15182746	copy number gain	SAMN00262981	Sequencing	Read depth and paired-end mapping	Heterozygous	2,961
essv15182747	copy number gain	SAMN00630225	Sequencing	Read depth and paired-end mapping	Heterozygous	3,102
essv15182748	copy number gain	SAMN01036713	Sequencing	Read depth and paired-end mapping	Heterozygous	3,109
essv15182749	copy number gain	SAMN01036728	Sequencing	Read depth and paired-end mapping	Heterozygous	2,564
essv15182750	copy number gain	SAMN01090776	Sequencing	Read depth and paired-end mapping	Heterozygous	3,137
essv15182751	copy number gain	SAMN01761307	Sequencing	Read depth and paired-end mapping	Heterozygous	3,217
essv15182752	copy number gain	SAMN01090769	Sequencing	Read depth and paired-end mapping	Heterozygous	2,975
essv15182753	copy number gain	SAMN01096724	Sequencing	Read depth and paired-end mapping	Heterozygous	2,661
essv15182754	copy number gain	SAMN01761564	Sequencing	Read depth and paired-end mapping	Heterozygous	2,268
essv15182755	copy number gain	SAMN00800945	Sequencing	Read depth and paired-end mapping	Heterozygous	2,595
essv15182756	copy number gain	SAMN00000485	Sequencing	Read depth and paired-end mapping	Heterozygous	2,624
essv15182757	copy number gain	SAMN00000566	Sequencing	Read depth and paired-end mapping	Heterozygous	2,413
essv15182758	copy number gain	SAMN00001687	Sequencing	Read depth and paired-end mapping	Heterozygous	2,530

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
essv15182728	Remapped	Perfect	NC_000015.10:g.242 94482_24314544del	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182729	Remapped	Perfect	NC_000015.10:g.242 94482_24314544del	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182730	Remapped	Perfect	NC_000015.10:g.242 94482_24314544del	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182731	Remapped	Perfect	NC_000015.10:g.242 94482_24314544del	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182732	Remapped	Perfect	NC_000015.10:g.242 94482_24314544del	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182733	Remapped	Perfect	NC_000015.10:g.242 94482_24314544del	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182734	Remapped	Perfect	NC_000015.10:g.242 94482_24314544del	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182735	Remapped	Perfect	NC_000015.10:g.242 94482_24314544del	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182736	Remapped	Perfect	NC_000015.10:g.242 94482_24314544del	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182737	Remapped	Perfect	NC_000015.10:g.242 94482_24314544del	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182738	Remapped	Perfect	NC_000015.10:g.242 94482_24314544del	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182739	Remapped	Perfect	NC_000015.10:g.242 94482_24314544del	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182740	Remapped	Perfect	NC_000015.10:g.242 94482_24314544del	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182741	Remapped	Perfect	NC_000015.10:g.242 94482_24314544dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182742	Remapped	Perfect	NC_000015.10:g.242 94482_24314544dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182743	Remapped	Perfect	NC_000015.10:g.242 94482_24314544dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182744	Remapped	Perfect	NC_000015.10:g.242 94482_24314544dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182745	Remapped	Perfect	NC_000015.10:g.242 94482_24314544dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182746	Remapped	Perfect	NC_000015.10:g.242 94482_24314544dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182747	Remapped	Perfect	NC_000015.10:g.242 94482_24314544dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182748	Remapped	Perfect	NC_000015.10:g.242 94482_24314544dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182749	Remapped	Perfect	NC_000015.10:g.242 94482_24314544dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182750	Remapped	Perfect	NC_000015.10:g.242 94482_24314544dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182751	Remapped	Perfect	NC_000015.10:g.242 94482_24314544dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182752	Remapped	Perfect	NC_000015.10:g.242 94482_24314544dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182753	Remapped	Perfect	NC_000015.10:g.242 94482_24314544dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182754	Remapped	Perfect	NC_000015.10:g.242 94482_24314544dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182755	Remapped	Perfect	NC_000015.10:g.242 94482_24314544dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182756	Remapped	Perfect	NC_000015.10:g.242 94482_24314544dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182757	Remapped	Perfect	NC_000015.10:g.242 94482_24314544dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182758	Remapped	Perfect	NC_000015.10:g.242 94482_24314544dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	24,294,482	24,314,544
essv15182728	Submitted genomic		NC_000015.9:g.2453 9629_24559691del	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182729	Submitted genomic		NC_000015.9:g.2453 9629_24559691del	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182730	Submitted genomic		NC_000015.9:g.2453 9629_24559691del	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182731	Submitted genomic		NC_000015.9:g.2453 9629_24559691del	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182732	Submitted genomic		NC_000015.9:g.2453 9629_24559691del	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182733	Submitted genomic		NC_000015.9:g.2453 9629_24559691del	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182734	Submitted genomic		NC_000015.9:g.2453 9629_24559691del	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182735	Submitted genomic		NC_000015.9:g.2453 9629_24559691del	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182736	Submitted genomic		NC_000015.9:g.2453 9629_24559691del	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182737	Submitted genomic		NC_000015.9:g.2453 9629_24559691del	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182738	Submitted genomic		NC_000015.9:g.2453 9629_24559691del	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182739	Submitted genomic		NC_000015.9:g.2453 9629_24559691del	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182740	Submitted genomic		NC_000015.9:g.2453 9629_24559691del	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182741	Submitted genomic		NC_000015.9:g.2453 9629_24559691dup	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182742	Submitted genomic		NC_000015.9:g.2453 9629_24559691dup	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182743	Submitted genomic		NC_000015.9:g.2453 9629_24559691dup	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182744	Submitted genomic		NC_000015.9:g.2453 9629_24559691dup	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182745	Submitted genomic		NC_000015.9:g.2453 9629_24559691dup	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182746	Submitted genomic		NC_000015.9:g.2453 9629_24559691dup	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182747	Submitted genomic		NC_000015.9:g.2453 9629_24559691dup	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182748	Submitted genomic		NC_000015.9:g.2453 9629_24559691dup	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182749	Submitted genomic		NC_000015.9:g.2453 9629_24559691dup	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182750	Submitted genomic		NC_000015.9:g.2453 9629_24559691dup	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182751	Submitted genomic		NC_000015.9:g.2453 9629_24559691dup	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182752	Submitted genomic		NC_000015.9:g.2453 9629_24559691dup	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182753	Submitted genomic		NC_000015.9:g.2453 9629_24559691dup	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182754	Submitted genomic		NC_000015.9:g.2453 9629_24559691dup	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182755	Submitted genomic		NC_000015.9:g.2453 9629_24559691dup	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182756	Submitted genomic		NC_000015.9:g.2453 9629_24559691dup	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182757	Submitted genomic		NC_000015.9:g.2453 9629_24559691dup	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691
essv15182758	Submitted genomic		NC_000015.9:g.2453 9629_24559691dup	GRCh37 (hg19)		NC_000015.9	Chr15	24,539,629	24,559,691

dbVar

Database of genomic structural variation

esv3635879

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.