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dbVar

Database of genomic structural variation

esv3834976

Organism: Homo sapiens

Study:estd219 (1000 Genomes Consortium Phase 3 Integrated SV)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:10,370

Publication(s):1000 Genomes Consortium Phase 3 Integrated SV

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 110 SVs from 27 studies. See in: genome view

Remapped(Score: Perfect):42,479,436-42,490,805

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
esv3834976	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	42,479,936 (-500, +0)	42,490,305 (-0, +500)
esv3834976	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000004.11	Chr4	42,481,953 (-500, +0)	42,492,322 (-0, +500)

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
essv18817103	deletion	HG01977	Sequencing	Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping	Heterozygous	3,218

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
essv18817103	Remapped	Perfect	NC_000004.12:g.(42 479436_42479936)_( 42490305_42490805) del	GRCh38.p12	First Pass	NC_000004.12	Chr4	42,479,936 (-500, +0)	42,490,305 (-0, +500)
essv18817103	Submitted genomic		NC_000004.11:g.(42 481453_42481953)_( 42492322_42492822) del	GRCh37 (hg19)		NC_000004.11	Chr4	42,481,953 (-500, +0)	42,492,322 (-0, +500)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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