esv3856822
- Organism: Homo sapiens
- Study:estd219 (1000 Genomes Consortium Phase 3 Integrated SV)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh37
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:74,139
- Publication(s):1000 Genomes Consortium Phase 3 Integrated SV
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 485 SVs from 62 studies. See in: genome view
Overlapping variant regions from other studies: 491 SVs from 62 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv3856822 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 17,645,643 (-3, +3) | 17,719,781 (-3, +3) |
| esv3856822 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000009.11 | Chr9 | 17,645,641 (-3, +3) | 17,719,779 (-3, +3) |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Zygosity | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| essv21493959 | deletion | HG02107 | Sequencing | Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping | Heterozygous | 4,371 |
| essv21493960 | deletion | NA20126 | Sequencing | Paired-end mapping, Read depth, Read depth and paired-end mapping, Split read mapping | Heterozygous | 3,500 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv21493959 | Remapped | Perfect | NC_000009.12:g.(17 645640_17645646)_( 17719778_17719784) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 17,645,643 (-3, +3) | 17,719,781 (-3, +3) |
| essv21493960 | Remapped | Perfect | NC_000009.12:g.(17 645640_17645646)_( 17719778_17719784) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 17,645,643 (-3, +3) | 17,719,781 (-3, +3) |
| essv21493959 | Submitted genomic | NC_000009.11:g.(17 645638_17645644)_( 17719776_17719782) del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 17,645,641 (-3, +3) | 17,719,779 (-3, +3) | ||
| essv21493960 | Submitted genomic | NC_000009.11:g.(17 645638_17645644)_( 17719776_17719782) del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 17,645,641 (-3, +3) | 17,719,779 (-3, +3) |