nsv3167734
- Organism: Homo sapiens
- Study:nstd154 (Möller et al. 2017)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38 (hg38)
- Variant Calls:7
- Validation:Not tested
- Clinical Assertions: No
- Region Size:5,817
- Publication(s):Möller et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 377 SVs from 66 studies. See in: genome view
Overlapping variant regions from other studies: 374 SVs from 66 studies. See in: genome view
Overlapping variant regions from other studies: 136 SVs from 28 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3167734 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000009.12 | Chr9 | 133,252,414 | 133,258,230 | ||
| nsv3167734 | Remapped | Good | GRCh37.p13 | Primary Assembly | Second Pass | NC_000009.11 | Chr9 | 136,127,801 | 136,133,621 |
| nsv3167734 | Remapped | Good | GRCh37.p13 | PATCHES | First Pass | NW_003315925.1 | Chr9|NW_00 3315925.1 | 78,373 | 84,324 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis |
|---|---|---|---|---|
| nssv14236269 | deletion | SAMN00001059 | Sequencing | Sequence alignment |
| nssv14236270 | deletion | SAMN00001666 | Sequencing | Sequence alignment |
| nssv14236271 | deletion | SAMN00000557 | Sequencing | Sequence alignment |
| nssv14236272 | deletion | SAMN00001679 | Sequencing | Sequence alignment |
| nssv14236273 | deletion | 83461642 | Sequencing | Sequence alignment |
| nssv14236274 | deletion | G1622696 | Sequencing | Sequence alignment |
| nssv14236275 | deletion | L3154695 | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14236269 | Submitted genomic | NC_000009.12:g.133 252414_133258230de l | GRCh38 (hg38) | NC_000009.12 | Chr9 | 133,252,414 | 133,258,230 | ||
| nssv14236270 | Submitted genomic | NC_000009.12:g.133 252414_133258230de l | GRCh38 (hg38) | NC_000009.12 | Chr9 | 133,252,414 | 133,258,230 | ||
| nssv14236271 | Submitted genomic | NC_000009.12:g.133 252414_133258230de l | GRCh38 (hg38) | NC_000009.12 | Chr9 | 133,252,414 | 133,258,230 | ||
| nssv14236272 | Submitted genomic | NC_000009.12:g.133 252414_133258230de l | GRCh38 (hg38) | NC_000009.12 | Chr9 | 133,252,414 | 133,258,230 | ||
| nssv14236273 | Submitted genomic | NC_000009.12:g.133 252414_133258230de l | GRCh38 (hg38) | NC_000009.12 | Chr9 | 133,252,414 | 133,258,230 | ||
| nssv14236274 | Submitted genomic | NC_000009.12:g.133 252414_133258230de l | GRCh38 (hg38) | NC_000009.12 | Chr9 | 133,252,414 | 133,258,230 | ||
| nssv14236275 | Submitted genomic | NC_000009.12:g.133 252414_133258230de l | GRCh38 (hg38) | NC_000009.12 | Chr9 | 133,252,414 | 133,258,230 | ||
| nssv14236269 | Remapped | Good | NW_003315925.1:g.7 8373_84324del | GRCh37.p13 | First Pass | NW_003315925.1 | Chr9|NW_00 3315925.1 | 78,373 | 84,324 |
| nssv14236270 | Remapped | Good | NW_003315925.1:g.7 8373_84324del | GRCh37.p13 | First Pass | NW_003315925.1 | Chr9|NW_00 3315925.1 | 78,373 | 84,324 |
| nssv14236271 | Remapped | Good | NW_003315925.1:g.7 8373_84324del | GRCh37.p13 | First Pass | NW_003315925.1 | Chr9|NW_00 3315925.1 | 78,373 | 84,324 |
| nssv14236272 | Remapped | Good | NW_003315925.1:g.7 8373_84324del | GRCh37.p13 | First Pass | NW_003315925.1 | Chr9|NW_00 3315925.1 | 78,373 | 84,324 |
| nssv14236273 | Remapped | Good | NW_003315925.1:g.7 8373_84324del | GRCh37.p13 | First Pass | NW_003315925.1 | Chr9|NW_00 3315925.1 | 78,373 | 84,324 |
| nssv14236274 | Remapped | Good | NW_003315925.1:g.7 8373_84324del | GRCh37.p13 | First Pass | NW_003315925.1 | Chr9|NW_00 3315925.1 | 78,373 | 84,324 |
| nssv14236275 | Remapped | Good | NW_003315925.1:g.7 8373_84324del | GRCh37.p13 | First Pass | NW_003315925.1 | Chr9|NW_00 3315925.1 | 78,373 | 84,324 |
| nssv14236269 | Remapped | Good | NC_000009.11:g.136 127801_136133621de l | GRCh37.p13 | Second Pass | NC_000009.11 | Chr9 | 136,127,801 | 136,133,621 |
| nssv14236270 | Remapped | Good | NC_000009.11:g.136 127801_136133621de l | GRCh37.p13 | Second Pass | NC_000009.11 | Chr9 | 136,127,801 | 136,133,621 |
| nssv14236271 | Remapped | Good | NC_000009.11:g.136 127801_136133621de l | GRCh37.p13 | Second Pass | NC_000009.11 | Chr9 | 136,127,801 | 136,133,621 |
| nssv14236272 | Remapped | Good | NC_000009.11:g.136 127801_136133621de l | GRCh37.p13 | Second Pass | NC_000009.11 | Chr9 | 136,127,801 | 136,133,621 |
| nssv14236273 | Remapped | Good | NC_000009.11:g.136 127801_136133621de l | GRCh37.p13 | Second Pass | NC_000009.11 | Chr9 | 136,127,801 | 136,133,621 |
| nssv14236274 | Remapped | Good | NC_000009.11:g.136 127801_136133621de l | GRCh37.p13 | Second Pass | NC_000009.11 | Chr9 | 136,127,801 | 136,133,621 |
| nssv14236275 | Remapped | Good | NC_000009.11:g.136 127801_136133621de l | GRCh37.p13 | Second Pass | NC_000009.11 | Chr9 | 136,127,801 | 136,133,621 |