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dbVar

Database of genomic structural variation

nsv3528501

Organism: Homo sapiens

Study:nstd152 (Chaisson et al. 2019)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38 (hg38)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:905

Publication(s):Chaisson et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 353 SVs from 48 studies. See in: genome view

Submitted genomic89,907,820-89,908,730

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv3528501	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000016.10	Chr16	89,907,820	89,908,724 (-5, +6)
nsv3528501	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	89,974,228	89,975,132 (-5, +6)

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
nssv14379355	duplication	HG00512	Sequencing	Sequence alignment	Heterozygous	13,827
nssv14384110	duplication	HG00514	Sequencing	Sequence alignment	Heterozygous	39,861
nssv14392572	duplication	SAMN00006466	Sequencing	Sequence alignment	Heterozygous	14,137

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv14379355	Submitted genomic		NC_000016.10:g.899 07820_(89908719_89 908730)dup	GRCh38 (hg38)		NC_000016.10	Chr16	89,907,820	89,908,724 (-5, +6)
nssv14384110	Submitted genomic		NC_000016.10:g.899 07820_(89908719_89 908730)dup	GRCh38 (hg38)		NC_000016.10	Chr16	89,907,820	89,908,724 (-5, +6)
nssv14392572	Submitted genomic		NC_000016.10:g.899 07820_(89908719_89 908730)dup	GRCh38 (hg38)		NC_000016.10	Chr16	89,907,820	89,908,724 (-5, +6)
nssv14379355	Remapped	Perfect	NC_000016.9:g.8997 4228_(89975127_899 75138)dup	GRCh37.p13	First Pass	NC_000016.9	Chr16	89,974,228	89,975,132 (-5, +6)
nssv14384110	Remapped	Perfect	NC_000016.9:g.8997 4228_(89975127_899 75138)dup	GRCh37.p13	First Pass	NC_000016.9	Chr16	89,974,228	89,975,132 (-5, +6)
nssv14392572	Remapped	Perfect	NC_000016.9:g.8997 4228_(89975127_899 75138)dup	GRCh37.p13	First Pass	NC_000016.9	Chr16	89,974,228	89,975,132 (-5, +6)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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