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dbVar

Database of genomic structural variation

nsv3554053

Organism: Homo sapiens

Study:nstd152 (Chaisson et al. 2019)
Variant Type:inversion
Method Type:Sequencing
Submitted on:GRCh38 (hg38)

Variant Calls:9
Validation:Not tested
Clinical Assertions: No
Region Size:537,878

Publication(s):Chaisson et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1294 SVs from 72 studies. See in: genome view

Submitted genomic65,645,190-66,183,069

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv3554053	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000009.12	Chr9	65,645,191 (-1, +0)	66,183,068 (-0, +1)
nsv3554053	Remapped	Pass	GRCh37.p13	Primary Assembly	First Pass	NC_000009.11	Chr9	42,827,894 (-1, +0)	43,163,646 (-0, +1)

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
nssv14452596	inversion	HG00512	Sequencing	Sequence alignment	Heterozygous	13,827
nssv14453915	inversion	SAMN00001694	Sequencing	Sequence alignment	Heterozygous	16,419
nssv14456902	inversion	SAMN00001696	Sequencing	Sequence alignment	Heterozygous	45,591
nssv14457019	inversion	SAMN00006580	Sequencing	Sequence alignment	Heterozygous	14,212
nssv14458390	inversion	SAMN00001695	Sequencing	Sequence alignment	Heterozygous	15,732
nssv14460921	inversion	HG00514	Sequencing	Sequence alignment	Heterozygous	39,861
nssv14464086	inversion	SAMN00006466	Sequencing	Sequence alignment	Heterozygous	14,137
nssv14466366	inversion	SAMN00006579	Sequencing	Sequence alignment	Heterozygous	13,953
nssv14467594	inversion	SAMN00006581	Sequencing	Sequence alignment	Heterozygous	41,185

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv14452596	Submitted genomic		NC_000009.12:g.(65 645190_65645191)_( 66183068_66183069) inv	GRCh38 (hg38)		NC_000009.12	Chr9	65,645,191 (-1, +0)	66,183,068 (-0, +1)
nssv14453915	Submitted genomic		NC_000009.12:g.(65 645190_65645191)_( 66183068_66183069) inv	GRCh38 (hg38)		NC_000009.12	Chr9	65,645,191 (-1, +0)	66,183,068 (-0, +1)
nssv14456902	Submitted genomic		NC_000009.12:g.(65 645190_65645191)_( 66183068_66183069) inv	GRCh38 (hg38)		NC_000009.12	Chr9	65,645,191 (-1, +0)	66,183,068 (-0, +1)
nssv14457019	Submitted genomic		NC_000009.12:g.(65 645190_65645191)_( 66183068_66183069) inv	GRCh38 (hg38)		NC_000009.12	Chr9	65,645,191 (-1, +0)	66,183,068 (-0, +1)
nssv14458390	Submitted genomic		NC_000009.12:g.(65 645190_65645191)_( 66183068_66183069) inv	GRCh38 (hg38)		NC_000009.12	Chr9	65,645,191 (-1, +0)	66,183,068 (-0, +1)
nssv14460921	Submitted genomic		NC_000009.12:g.(65 645190_65645191)_( 66183068_66183069) inv	GRCh38 (hg38)		NC_000009.12	Chr9	65,645,191 (-1, +0)	66,183,068 (-0, +1)
nssv14464086	Submitted genomic		NC_000009.12:g.(65 645190_65645191)_( 66183068_66183069) inv	GRCh38 (hg38)		NC_000009.12	Chr9	65,645,191 (-1, +0)	66,183,068 (-0, +1)
nssv14466366	Submitted genomic		NC_000009.12:g.(65 645190_65645191)_( 66183068_66183069) inv	GRCh38 (hg38)		NC_000009.12	Chr9	65,645,191 (-1, +0)	66,183,068 (-0, +1)
nssv14467594	Submitted genomic		NC_000009.12:g.(65 645190_65645191)_( 66183068_66183069) inv	GRCh38 (hg38)		NC_000009.12	Chr9	65,645,191 (-1, +0)	66,183,068 (-0, +1)
nssv14452596	Remapped	Pass	NC_000009.11:g.(42 827893_42827894)_( 43163646_43163647) inv	GRCh37.p13	First Pass	NC_000009.11	Chr9	42,827,894 (-1, +0)	43,163,646 (-0, +1)
nssv14453915	Remapped	Pass	NC_000009.11:g.(42 827893_42827894)_( 43163646_43163647) inv	GRCh37.p13	First Pass	NC_000009.11	Chr9	42,827,894 (-1, +0)	43,163,646 (-0, +1)
nssv14456902	Remapped	Pass	NC_000009.11:g.(42 827893_42827894)_( 43163646_43163647) inv	GRCh37.p13	First Pass	NC_000009.11	Chr9	42,827,894 (-1, +0)	43,163,646 (-0, +1)
nssv14457019	Remapped	Pass	NC_000009.11:g.(42 827893_42827894)_( 43163646_43163647) inv	GRCh37.p13	First Pass	NC_000009.11	Chr9	42,827,894 (-1, +0)	43,163,646 (-0, +1)
nssv14458390	Remapped	Pass	NC_000009.11:g.(42 827893_42827894)_( 43163646_43163647) inv	GRCh37.p13	First Pass	NC_000009.11	Chr9	42,827,894 (-1, +0)	43,163,646 (-0, +1)
nssv14460921	Remapped	Pass	NC_000009.11:g.(42 827893_42827894)_( 43163646_43163647) inv	GRCh37.p13	First Pass	NC_000009.11	Chr9	42,827,894 (-1, +0)	43,163,646 (-0, +1)
nssv14464086	Remapped	Pass	NC_000009.11:g.(42 827893_42827894)_( 43163646_43163647) inv	GRCh37.p13	First Pass	NC_000009.11	Chr9	42,827,894 (-1, +0)	43,163,646 (-0, +1)
nssv14466366	Remapped	Pass	NC_000009.11:g.(42 827893_42827894)_( 43163646_43163647) inv	GRCh37.p13	First Pass	NC_000009.11	Chr9	42,827,894 (-1, +0)	43,163,646 (-0, +1)
nssv14467594	Remapped	Pass	NC_000009.11:g.(42 827893_42827894)_( 43163646_43163647) inv	GRCh37.p13	First Pass	NC_000009.11	Chr9	42,827,894 (-1, +0)	43,163,646 (-0, +1)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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