nsv3405934
- Organism: Homo sapiens
- Study:nstd162 (Audano et al. 2019)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38 (hg38)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Audano et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 484 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 485 SVs from 22 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3405934 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000023.11 | ChrX | 16,181,874 | 16,181,874 | ||
| nsv3405934 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000023.10 | ChrX | 16,199,997 | 16,199,997 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14811354 | herv insertion | SAMN05603847 | Sequencing | de novo and local sequence assembly | 26,021 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14811354 | Submitted genomic | NC_000023.11:g.161 81874_16181875ins5 3 | GRCh38 (hg38) | NC_000023.11 | ChrX | 16,181,874 | 16,181,874 | ||
| nssv14811354 | Remapped | Perfect | NC_000023.10:g.161 99997_16199998ins5 3NC_000023.10:g.16 199997_16199998ins 53 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 16,199,997 | 16,199,997 |