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dbVar

Database of genomic structural variation

nsv4433537

Organism: Homo sapiens

Study:nstd172 (Deng et al. 2019)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:7
Validation:Not tested
Clinical Assertions: No
Region Size:2,000

Publication(s):Deng et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 154 SVs from 26 studies. See in: genome view

Remapped(Score: Perfect):10,952,875-10,954,874

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv4433537	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	10,952,875	10,954,874
nsv4433537	Submitted genomic		GRCh37.p13	Primary Assembly		NC_000002.11	Chr2	11,093,001	11,095,000

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15746039	duplication	NB09	Sequencing	Sequence alignment	582
nssv15748468	duplication	SMI034	Sequencing	Sequence alignment	578
nssv15750270	duplication	NB07	Sequencing	Sequence alignment	571
nssv15750783	duplication	BTQ055	Sequencing	Sequence alignment	565
nssv15752501	duplication	NB12	Sequencing	Sequence alignment	599
nssv15752927	duplication	NB08	Sequencing	Sequence alignment	574
nssv15754713	duplication	BTQ016	Sequencing	Sequence alignment	628

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv15746039	Remapped	Perfect	NC_000002.12:g.109 52875_10954874dup	GRCh38.p12	First Pass	NC_000002.12	Chr2	10,952,875	10,954,874
nssv15748468	Remapped	Perfect	NC_000002.12:g.109 52875_10954874dup	GRCh38.p12	First Pass	NC_000002.12	Chr2	10,952,875	10,954,874
nssv15750270	Remapped	Perfect	NC_000002.12:g.109 52875_10954874dup	GRCh38.p12	First Pass	NC_000002.12	Chr2	10,952,875	10,954,874
nssv15750783	Remapped	Perfect	NC_000002.12:g.109 52875_10954874dup	GRCh38.p12	First Pass	NC_000002.12	Chr2	10,952,875	10,954,874
nssv15752501	Remapped	Perfect	NC_000002.12:g.109 52875_10954874dup	GRCh38.p12	First Pass	NC_000002.12	Chr2	10,952,875	10,954,874
nssv15752927	Remapped	Perfect	NC_000002.12:g.109 52875_10954874dup	GRCh38.p12	First Pass	NC_000002.12	Chr2	10,952,875	10,954,874
nssv15754713	Remapped	Perfect	NC_000002.12:g.109 52875_10954874dup	GRCh38.p12	First Pass	NC_000002.12	Chr2	10,952,875	10,954,874
nssv15746039	Submitted genomic		NC_000002.11:g.110 93001_11095000dup	GRCh37.p13		NC_000002.11	Chr2	11,093,001	11,095,000
nssv15748468	Submitted genomic		NC_000002.11:g.110 93001_11095000dup	GRCh37.p13		NC_000002.11	Chr2	11,093,001	11,095,000
nssv15750270	Submitted genomic		NC_000002.11:g.110 93001_11095000dup	GRCh37.p13		NC_000002.11	Chr2	11,093,001	11,095,000
nssv15750783	Submitted genomic		NC_000002.11:g.110 93001_11095000dup	GRCh37.p13		NC_000002.11	Chr2	11,093,001	11,095,000
nssv15752501	Submitted genomic		NC_000002.11:g.110 93001_11095000dup	GRCh37.p13		NC_000002.11	Chr2	11,093,001	11,095,000
nssv15752927	Submitted genomic		NC_000002.11:g.110 93001_11095000dup	GRCh37.p13		NC_000002.11	Chr2	11,093,001	11,095,000
nssv15754713	Submitted genomic		NC_000002.11:g.110 93001_11095000dup	GRCh37.p13		NC_000002.11	Chr2	11,093,001	11,095,000

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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