nsv909689
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:7
- Validation:Not tested
- Clinical Assertions: No
- Region Size:34,983
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 404 SVs from 44 studies. See in: genome view
Overlapping variant regions from other studies: 404 SVs from 44 studies. See in: genome view
Overlapping variant regions from other studies: 182 SVs from 13 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv909689 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 63,164,808 | 63,172,895 | 63,193,409 | 63,199,790 |
| nsv909689 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000018.9 | Chr18 | 60,832,041 | 60,840,128 | 60,860,642 | 60,867,023 |
| nsv909689 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000018.8 | Chr18 | 58,983,021 | 58,991,108 | 59,011,622 | 59,018,003 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1554462 | copy number loss | MS20813 | SNP array | SNP genotyping analysis | 39 |
| nssv1556529 | copy number loss | MS22103 | SNP array | SNP genotyping analysis | 17 |
| nssv1557776 | copy number loss | MS22858 | SNP array | SNP genotyping analysis | 30 |
| nssv1560541 | copy number loss | MS24529 | SNP array | SNP genotyping analysis | 5 |
| nssv1565397 | copy number loss | IS30409 | SNP array | SNP genotyping analysis | 21 |
| nssv1600081 | copy number loss | IS41838 | SNP array | SNP genotyping analysis | 10 |
| nssv1601257 | copy number loss | IS41997 | SNP array | SNP genotyping analysis | 8 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1554462 | Remapped | Perfect | NC_000018.10:g.(63 164808_63172895)_( 63193409_63199790) del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 63,164,808 | 63,172,895 | 63,193,409 | 63,199,790 |
| nssv1556529 | Remapped | Perfect | NC_000018.10:g.(63 164808_63172895)_( 63193409_63199790) del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 63,164,808 | 63,172,895 | 63,193,409 | 63,199,790 |
| nssv1557776 | Remapped | Perfect | NC_000018.10:g.(63 164808_63172895)_( 63193409_63199790) del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 63,164,808 | 63,172,895 | 63,193,409 | 63,199,790 |
| nssv1560541 | Remapped | Perfect | NC_000018.10:g.(63 164808_63172895)_( 63193409_63199790) del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 63,164,808 | 63,172,895 | 63,193,409 | 63,199,790 |
| nssv1565397 | Remapped | Perfect | NC_000018.10:g.(63 164808_63172895)_( 63193409_63199790) del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 63,164,808 | 63,172,895 | 63,193,409 | 63,199,790 |
| nssv1600081 | Remapped | Perfect | NC_000018.10:g.(63 164808_63172895)_( 63193409_63199790) del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 63,164,808 | 63,172,895 | 63,193,409 | 63,199,790 |
| nssv1601257 | Remapped | Perfect | NC_000018.10:g.(63 164808_63172895)_( 63193409_63199790) del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 63,164,808 | 63,172,895 | 63,193,409 | 63,199,790 |
| nssv1554462 | Remapped | Perfect | NC_000018.9:g.(608 32041_60840128)_(6 0860642_60867023)d el | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 60,832,041 | 60,840,128 | 60,860,642 | 60,867,023 |
| nssv1556529 | Remapped | Perfect | NC_000018.9:g.(608 32041_60840128)_(6 0860642_60867023)d el | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 60,832,041 | 60,840,128 | 60,860,642 | 60,867,023 |
| nssv1557776 | Remapped | Perfect | NC_000018.9:g.(608 32041_60840128)_(6 0860642_60867023)d el | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 60,832,041 | 60,840,128 | 60,860,642 | 60,867,023 |
| nssv1560541 | Remapped | Perfect | NC_000018.9:g.(608 32041_60840128)_(6 0860642_60867023)d el | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 60,832,041 | 60,840,128 | 60,860,642 | 60,867,023 |
| nssv1565397 | Remapped | Perfect | NC_000018.9:g.(608 32041_60840128)_(6 0860642_60867023)d el | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 60,832,041 | 60,840,128 | 60,860,642 | 60,867,023 |
| nssv1600081 | Remapped | Perfect | NC_000018.9:g.(608 32041_60840128)_(6 0860642_60867023)d el | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 60,832,041 | 60,840,128 | 60,860,642 | 60,867,023 |
| nssv1601257 | Remapped | Perfect | NC_000018.9:g.(608 32041_60840128)_(6 0860642_60867023)d el | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 60,832,041 | 60,840,128 | 60,860,642 | 60,867,023 |
| nssv1554462 | Submitted genomic | NC_000018.8:g.(589 83021_58991108)_(5 9011622_59018003)d el | NCBI36 (hg18) | NC_000018.8 | Chr18 | 58,983,021 | 58,991,108 | 59,011,622 | 59,018,003 | ||
| nssv1556529 | Submitted genomic | NC_000018.8:g.(589 83021_58991108)_(5 9011622_59018003)d el | NCBI36 (hg18) | NC_000018.8 | Chr18 | 58,983,021 | 58,991,108 | 59,011,622 | 59,018,003 | ||
| nssv1557776 | Submitted genomic | NC_000018.8:g.(589 83021_58991108)_(5 9011622_59018003)d el | NCBI36 (hg18) | NC_000018.8 | Chr18 | 58,983,021 | 58,991,108 | 59,011,622 | 59,018,003 | ||
| nssv1560541 | Submitted genomic | NC_000018.8:g.(589 83021_58991108)_(5 9011622_59018003)d el | NCBI36 (hg18) | NC_000018.8 | Chr18 | 58,983,021 | 58,991,108 | 59,011,622 | 59,018,003 | ||
| nssv1565397 | Submitted genomic | NC_000018.8:g.(589 83021_58991108)_(5 9011622_59018003)d el | NCBI36 (hg18) | NC_000018.8 | Chr18 | 58,983,021 | 58,991,108 | 59,011,622 | 59,018,003 | ||
| nssv1600081 | Submitted genomic | NC_000018.8:g.(589 83021_58991108)_(5 9011622_59018003)d el | NCBI36 (hg18) | NC_000018.8 | Chr18 | 58,983,021 | 58,991,108 | 59,011,622 | 59,018,003 | ||
| nssv1601257 | Submitted genomic | NC_000018.8:g.(589 83021_58991108)_(5 9011622_59018003)d el | NCBI36 (hg18) | NC_000018.8 | Chr18 | 58,983,021 | 58,991,108 | 59,011,622 | 59,018,003 |