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dbVar

Database of genomic structural variation

nsv4641085

Organism: Homo sapiens

Study:nstd186 (NCBI Curated Common Structural Variants)
Variant Type:mobile element deletion
Method Type:Curated
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:9,185

Description:esv3842807 from 1000 Genomes Consortium Phase 3 Integrated SV. For a full list of variants now included in nstd186, refer to the mapping file provided here.

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 105 SVs from 26 studies. See in: genome view

Remapped(Score: Perfect):156,657,719-156,666,903

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv4641085	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	156,657,719	156,666,903
nsv4641085	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	156,084,730	156,093,914

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16193961	herv deletion	Curated	Curated

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16193961	Remapped	Perfect	NC_000005.10:g.156 657719_156666903de l	GRCh38.p12	First Pass	NC_000005.10	Chr5	156,657,719	156,666,903
nssv16193961	Submitted genomic		NC_000005.9:g.1560 84730_156093914del	GRCh37 (hg19)		NC_000005.9	Chr5	156,084,730	156,093,914

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv16193961	0.041	205	5008

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