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dbVar

Database of genomic structural variation

nsv4728106

Organism: Homo sapiens

Study:nstd197 (Boujemaa et al. 2021)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:6,338

Publication(s):Boujemaa et al. 2021

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 225 SVs from 46 studies. See in: genome view

Remapped(Score: Perfect):90,035,213-90,041,550

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv4728106	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	90,035,213	90,041,550
nsv4728106	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000011.9	Chr11	89,768,381	89,774,718

Variant Call Information

Variant Call ID	Type	Method	Analysis	Subject Phenotype
nssv16253892	copy number loss	Sequencing	Read depth	Breast cancer
nssv16253893	copy number loss	Sequencing	Read depth	Breast cancer

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16253892	Remapped	Perfect	NC_000011.10:g.900 35213_90041550del	GRCh38.p12	First Pass	NC_000011.10	Chr11	90,035,213	90,041,550
nssv16253893	Remapped	Perfect	NC_000011.10:g.900 41052_90041550del	GRCh38.p12	First Pass	NC_000011.10	Chr11	90,041,052	90,041,550
nssv16253892	Submitted genomic		NC_000011.9:g.8976 8381_89774718del	GRCh37 (hg19)		NC_000011.9	Chr11	89,768,381	89,774,718
nssv16253893	Submitted genomic		NC_000011.9:g.8977 4220_89774718del	GRCh37 (hg19)		NC_000011.9	Chr11	89,774,220	89,774,718

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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