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dbVar

Database of genomic structural variation

nsv5393799

Organism: Homo sapiens

Study:nstd186 (NCBI Curated Common Structural Variants)
Variant Type:mobile element deletion
Method Type:Curated
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:2,564

Description:nsv5034970 from Abel et. al 2020. For a full list of variants now included in nstd186, refer to the mapping file provided here.

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 139 SVs from 49 studies. See in: genome view

Remapped(Score: Perfect):81,709,448-81,712,011

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5393799	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000009.12	Chr9	81,709,448	81,712,011
nsv5393799	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000009.11	Chr9	84,324,363	84,326,926

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16888721	sva deletion	Curated	Curated

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16888721	Remapped	Perfect	NC_000009.12:g.817 09448_81712011del	GRCh38.p12	First Pass	NC_000009.12	Chr9	81,709,448	81,712,011
nssv16888721	Submitted genomic		NC_000009.11:g.843 24363_84326926del	GRCh37 (hg19)		NC_000009.11	Chr9	84,324,363	84,326,926

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv16888721	0.863	25235	29246

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