nsv996822

Organisms: Gorilla beringei graueri, Gorilla gorilla diehli, Gorilla gorilla gorilla, Homo sapiens ssp. Denisova, Homo sapiens, Pan paniscus, Pan troglodytes ellioti, Pan troglodytes schweinfurthii, Pan troglodytes troglodytes, Pan troglodytes verus

Study:nstd82 (Sudmant et al. 2013)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:P_pygmaeus_2.0.2 (ponAbe2)

Variant Calls:80
Validation:Not tested
Clinical Assertions: No
Region Size:3,344

Publication(s):Sudmant et al. 2013

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

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Select assembly:

Submitted artifact7,388,402-7,391,745

Variant Region Placement Information

Variant Region ID	Placement Type	Assembly	Assembly Unit	Sequence ID	Chr	Start	Stop
nsv996822	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Primary Assembly		Chr1_rando m	7,388,402	7,391,745

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv3434618	deletion	Homo_denisova-Denisova_30x	Sequencing	Read depth	19,139
nssv3434619	deletion	SAMN01920473	Sequencing	Read depth	13,799
nssv3434620	deletion	SAMN01920474	Sequencing	Read depth	13,812
nssv3434621	deletion	SAMN01920476	Sequencing	Read depth	13,908
nssv3434622	deletion	SAMN01920492	Sequencing	Read depth	13,471
nssv3434623	deletion	SAMN01920493	Sequencing	Read depth	13,471
nssv3434624	deletion	SAMN01920494	Sequencing	Read depth	13,471
nssv3434625	deletion	SAMN01920495	Sequencing	Read depth	13,471
nssv3434626	deletion	SAMN01920496	Sequencing	Read depth	13,471
nssv3434627	deletion	SAMN01920477	Sequencing	Read depth	13,641
nssv3434628	deletion	SAMN01920479	Sequencing	Read depth	13,667
nssv3434629	deletion	SAMN01920478	Sequencing	Read depth	13,652
nssv3434630	deletion	SAMN01920480	Sequencing	Read depth	13,643
nssv3434631	deletion	Gorilla_gorilla_gorilla-9753_Kokomo	Sequencing	Read depth	13,644
nssv3434632	deletion	SAMN01920483	Sequencing	Read depth	13,645
nssv3434633	deletion	SAMN01920484	Sequencing	Read depth	13,628
nssv3434634	deletion	SAMN01920485	Sequencing	Read depth	13,644
nssv3434635	deletion	Gorilla_gorilla_gorilla-A935_Fritz	Sequencing	Read depth	13,652
nssv3434636	deletion	SAMN01920487	Sequencing	Read depth	13,625
nssv3434637	deletion	SAMN01920489	Sequencing	Read depth	13,471
nssv3434638	deletion	SAMN01920529	Sequencing	Read depth	14,610
nssv3434639	deletion	SAMN01920534	Sequencing	Read depth	14,815
nssv3434640	deletion	SAMN01920536	Sequencing	Read depth	15,183
nssv3434641	deletion	SAMN01920541	Sequencing	Read depth	14,615
nssv3434642	deletion	Pan_troglodytes_verus-A907_Susie_A	Sequencing	Read depth	14,602
nssv3434643	deletion	SAMN01920537	Sequencing	Read depth	14,600
nssv3434644	deletion	SAMN01920540	Sequencing	Read depth	14,584
nssv3434645	deletion	SAMN01920539	Sequencing	Read depth	14,708
nssv3434646	deletion	SAMN01920499	Sequencing	Read depth	13,641
nssv3434647	deletion	SAMN01920502	Sequencing	Read depth	13,644
nssv3434648	deletion	SAMN01920503	Sequencing	Read depth	13,626
nssv3434649	deletion	SAMN01920497	Sequencing	Read depth	13,633
nssv3434650	deletion	SAMN01920500	Sequencing	Read depth	13,643
nssv3434651	deletion	SAMN01920501	Sequencing	Read depth	13,643
nssv3434652	deletion	SAMN01920498	Sequencing	Read depth	13,636
nssv3434653	deletion	Gorilla_gorilla_gorilla-Kwan	Sequencing	Read depth	13,471
nssv3434654	deletion	Gorilla_beringei_graueri-Mukisi	Sequencing	Read depth	13,597
nssv3434655	deletion	Gorilla_gorilla_gorilla-Kamilah	Sequencing	Read depth	13,471
nssv3442479	deletion	Gorilla_gorilla_gorilla-Snowflake	Sequencing	Read depth	13,657
nssv3442480	deletion	SAMN01920490	Sequencing	Read depth	13,471
nssv3442481	deletion	SAMN01920491	Sequencing	Read depth	13,671
nssv3442482	deletion	HGDP01307	Sequencing	Read depth	17,161
nssv3442483	deletion	HGDP00521	Sequencing	Read depth	17,171
nssv3442484	deletion	HGDP00778	Sequencing	Read depth	17,185
nssv3442485	deletion	HGDP00998	Sequencing	Read depth	17,267
nssv3442486	deletion	HGDP01284	Sequencing	Read depth	17,196
nssv3442487	deletion	HGDP00456	Sequencing	Read depth	17,189
nssv3442488	deletion	HGDP00542	Sequencing	Read depth	17,157
nssv3442489	deletion	HGDP01029	Sequencing	Read depth	17,182
nssv3442490	deletion	HGDP00665	Sequencing	Read depth	17,185
nssv3442491	deletion	HGDP00927	Sequencing	Read depth	17,185
nssv3442492	deletion	SAMN01920504	Sequencing	Read depth	14,831
nssv3442493	deletion	SAMN01920506	Sequencing	Read depth	14,796
nssv3442494	deletion	SAMN01920507	Sequencing	Read depth	14,643
nssv3442495	deletion	SAMN01920508	Sequencing	Read depth	14,784
nssv3442496	deletion	SAMN01920509	Sequencing	Read depth	14,796
nssv3442497	deletion	Pan_paniscus-A920_Kidogo	Sequencing	Read depth	14,643
nssv3442498	deletion	SAMN01920510	Sequencing	Read depth	14,643
nssv3442499	deletion	SAMN01920511	Sequencing	Read depth	14,796
nssv3442500	deletion	SAMN01920513	Sequencing	Read depth	14,803
nssv3442501	deletion	SAMN01920514	Sequencing	Read depth	14,790
nssv3442502	deletion	SAMN01920515	Sequencing	Read depth	14,814
nssv3442503	deletion	SAMN01920516	Sequencing	Read depth	14,643
nssv3442504	deletion	Pan_paniscus-A951_Pongo	Sequencing	Read depth	14,643
nssv3442505	deletion	Pan_paniscus-X00095_Kakowet	Sequencing	Read depth	14,858
nssv3442506	deletion	SAMN01920517	Sequencing	Read depth	14,560
nssv3442507	deletion	SAMN01920518	Sequencing	Read depth	14,544
nssv3442508	deletion	SAMN01920519	Sequencing	Read depth	14,560
nssv3442509	deletion	SAMN01920520	Sequencing	Read depth	14,560
nssv3442510	deletion	SAMN01920521	Sequencing	Read depth	14,554
nssv3442511	deletion	SAMN01920523	Sequencing	Read depth	14,551
nssv3442512	deletion	SAMN01920524	Sequencing	Read depth	14,557
nssv3442513	deletion	SAMN01920525	Sequencing	Read depth	14,553
nssv3442514	deletion	SAMN01920526	Sequencing	Read depth	14,541
nssv3442515	deletion	SAMN01920522	Sequencing	Read depth	14,557
nssv3442516	deletion	SAMN01920527	Sequencing	Read depth	14,562
nssv3442517	deletion	SAMN01920528	Sequencing	Read depth	14,776
nssv3442518	deletion	SAMN01920531	Sequencing	Read depth	14,608
nssv3442519	deletion	SAMN01920532	Sequencing	Read depth	14,576
nssv3442520	deletion	Pan_troglodytes_schweinfurthii-Yolanda	Sequencing	Read depth	14,664

Variant Call Placement Information

Variant Call ID	Placement Type	Assembly	Chr	Start	Stop
nssv3434618	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434619	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434620	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434621	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434622	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434623	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434624	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434625	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434626	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434627	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434628	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434629	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434630	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434631	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434632	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434633	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434634	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434635	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434636	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434637	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434638	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434639	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434640	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434641	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434642	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434643	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434644	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434645	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434646	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434647	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434648	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434649	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434650	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434651	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434652	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434653	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434654	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3434655	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442479	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442480	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442481	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442482	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442483	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442484	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442485	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442486	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442487	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442488	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442489	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442490	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442491	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442492	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442493	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442494	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442495	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442496	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442497	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442498	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442499	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442500	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442501	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442502	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442503	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442504	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442505	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442506	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442507	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442508	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442509	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442510	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442511	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442512	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442513	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442514	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442515	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442516	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442517	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442518	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442519	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745
nssv3442520	Submitted artifact	P_pygmaeus_2.0.2 (ponAbe2)	Chr1_rando m	7,388,402	7,391,745

dbVar

Database of genomic structural variation

nsv996822

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant