nsv511132
- Organism: Homo sapiens
- Study:nstd50 (Arlt et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:35,044
- Publication(s):Arlt et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1101 SVs from 86 studies. See in: genome view
Overlapping variant regions from other studies: 1101 SVs from 86 studies. See in: genome view
Overlapping variant regions from other studies: 602 SVs from 29 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv511132 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 103,560,435 | 103,562,856 | 103,595,065 | 103,595,478 |
| nsv511132 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 104,103,057 | 104,105,478 | 104,137,687 | 104,138,100 |
| nsv511132 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000001.9 | Chr1 | 103,904,580 | 103,907,001 | 103,939,210 | 103,939,623 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv626698 | copy number gain | 1 | SNP array | SNP genotyping analysis | 2,637 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv626698 | Remapped | Perfect | NC_000001.11:g.(10 3560435_103562856) _(103595065_103595 478)dup | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 103,560,435 | 103,562,856 | 103,595,065 | 103,595,478 |
| nssv626698 | Remapped | Perfect | NC_000001.10:g.(10 4103057_104105478) _(104137687_104138 100)dup | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 104,103,057 | 104,105,478 | 104,137,687 | 104,138,100 |
| nssv626698 | Submitted genomic | NC_000001.9:g.(103 904580_103907001)_ (103939210_1039396 23)dup | NCBI36 (hg18) | NC_000001.9 | Chr1 | 103,904,580 | 103,907,001 | 103,939,210 | 103,939,623 |