nsv590209
- Organism: Homo sapiens
- Study:nstd54 (Cooper et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:32,571
- Publication(s):Cooper et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 162 SVs from 42 studies. See in: genome view
Overlapping variant regions from other studies: 162 SVs from 42 studies. See in: genome view
Overlapping variant regions from other studies: 43 SVs from 14 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv590209 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 46,976,724 | 47,009,294 |
| nsv590209 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 47,018,214 | 47,050,784 |
| nsv590209 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 46,993,218 | 47,025,788 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv962609 | copy number loss | SNP array | SNP genotyping analysis |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv962609 | Remapped | Perfect | NC_000003.12:g.(?_ 46976724)_(4700929 4_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 46,976,724 | 47,009,294 |
| nssv962609 | Remapped | Perfect | NC_000003.11:g.(?_ 47018214)_(4705078 4_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 47,018,214 | 47,050,784 |
| nssv962609 | Submitted genomic | NC_000003.10:g.(?_ 46993218)_(4702578 8_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 46,993,218 | 47,025,788 |