nsv1757481
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:5
- Validation:Not tested
- Clinical Assertions: No
- Region Size:17
- Description:MOTIF=[A],NS=[301],REF=[17.0],RL=[17],RPA=[15.
0,16.0,18.0,19.0],RU=[A],QUAL=[120702] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 86 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 86 SVs from 20 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1757481 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000014.9 | Chr14 | 89,549,274 | 89,549,290 |
| nsv1757481 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000014.8 | Chr14 | 90,015,618 | 90,015,634 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv10000000 | short tandem repeat | (A) 19 | Sequencing | Genotyping |
| nssv10000001 | short tandem repeat | (A) 18 | Sequencing | Genotyping |
| nssv10000002 | short tandem repeat | (A) 17 (ref) | Sequencing | Genotyping |
| nssv9999998 | short tandem repeat | (A) 16 | Sequencing | Genotyping |
| nssv9999999 | short tandem repeat | (A) 15 | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv10000000 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 89,549,274 | 89,549,290 |
| nssv10000001 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 89,549,274 | 89,549,290 |
| nssv10000002 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 89,549,274 | 89,549,290 |
| nssv9999998 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 89,549,274 | 89,549,290 |
| nssv9999999 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 89,549,274 | 89,549,290 |
| nssv10000000 | Submitted genomic | GRCh37 (hg19) | NC_000014.8 | Chr14 | 90,015,618 | 90,015,634 | ||
| nssv10000001 | Submitted genomic | GRCh37 (hg19) | NC_000014.8 | Chr14 | 90,015,618 | 90,015,634 | ||
| nssv10000002 | Submitted genomic | GRCh37 (hg19) | NC_000014.8 | Chr14 | 90,015,618 | 90,015,634 | ||
| nssv9999998 | Submitted genomic | GRCh37 (hg19) | NC_000014.8 | Chr14 | 90,015,618 | 90,015,634 | ||
| nssv9999999 | Submitted genomic | GRCh37 (hg19) | NC_000014.8 | Chr14 | 90,015,618 | 90,015,634 |