nsv1145898
- Organism: Homo sapiens
- Study:nstd107 (John et al. 2014)
- Variant Type:insertion
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:171
- Publication(s):John et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 336 SVs from 46 studies. See in: genome view
Overlapping variant regions from other studies: 39 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 336 SVs from 46 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1145898 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 158,410,783 | 158,410,953 |
| nsv1145898 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_187560.1 | Chr7|NT_18 7560.1 | 66,222 | 66,392 |
| nsv1145898 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000007.13 | Chr7 | 158,203,475 | 158,203,645 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv3997262 | insertion | KWB1 | Sequencing | Read depth and paired-end mapping | 8,440 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv3997262 | Remapped | Perfect | NT_187560.1:g.(662 22_?)_(?_66392)ins ? | GRCh38.p12 | Second Pass | NT_187560.1 | Chr7|NT_18 7560.1 | 66,222 | 66,392 |
| nssv3997262 | Remapped | Perfect | NC_000007.14:g.(15 8410783_?)_(?_1584 10953)ins? | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 158,410,783 | 158,410,953 |
| nssv3997262 | Submitted genomic | NC_000007.13:g.(15 8203475_?)_(?_1582 03645)ins(0_?) | GRCh37 (hg19) | NC_000007.13 | Chr7 | 158,203,475 | 158,203,645 |