Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv1159628

Organism: Homo sapiens

Study:nstd106 (Alsmadi et al. 2014)
Variant Type:translocation
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:1

Publication(s):Alsmadi et al. 2014

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 273 SVs from 36 studies. See in: genome view

Remapped(Score: Perfect):81,970,391-81,970,391

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop	strand
nsv1159628	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000017.11	Chr17	81,970,391	81,970,391	-
nsv1159628	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000023.11	ChrX	108,047,871	108,047,871	+
nsv1159628	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000017.10	Chr17	79,928,267	79,928,267	-
nsv1159628	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000023.10	ChrX	107,291,101	107,291,101	+

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv4024629	interchromosomal translocation	KWS1	Sequencing	Read depth and paired-end mapping	22,470

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop	strand
nssv4024629	Remapped	Perfect	GRCh38.p12	First Pass	NC_000017.11	Chr17	81,970,391	81,970,391	-
nssv4024629	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	108,047,871	108,047,871	+
nssv4024629	Submitted genomic		GRCh37 (hg19)		NC_000017.10	Chr17	79,928,267	79,928,267	-
nssv4024629	Submitted genomic		GRCh37 (hg19)		NC_000023.10	ChrX	107,291,101	107,291,101	+

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI