nsv1187800

Organisms: Homo sapiens neanderthalensis, Homo sapiens ssp. Denisova, Homo sapiens

Study:nstd112 (Sudmant et al. 2015)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:226
Validation:Not tested
Clinical Assertions: No
Region Size:19,504

Publication(s):Sudmant et al. 2015

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 467 SVs from 38 studies. See in: genome view

Remapped(Score: Perfect):88,395,258-88,414,761

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv1187800	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nsv1187800	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000023.10	ChrX	87,650,259	87,669,762

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv7397802	copy number variation	SAMN02603821	Sequencing	Read depth	1	14,590
nssv7397803	copy number variation	SAMN03783160	Sequencing	Read depth	2	14,691
nssv7397804	copy number variation	SAMN03783161	Sequencing	Read depth	2	14,683
nssv7397805	copy number variation	SAMEA2164340	Sequencing	Read depth	1	14,576
nssv7397806	copy number variation	SAMEA2164175	Sequencing	Read depth	1	14,530
nssv7397807	copy number variation	SAMN03783162	Sequencing	Read depth	1	14,644
nssv7397808	copy number variation	SAMEA2164380	Sequencing	Read depth	1	14,669
nssv7397809	copy number variation	SAMN03783163	Sequencing	Read depth	2	14,670
nssv7397810	copy number variation	SAMN02603802	Sequencing	Read depth	2	14,703
nssv7397811	copy number variation	SAMN02603804	Sequencing	Read depth	2	14,669
nssv7397812	copy number variation	SAMN03783164	Sequencing	Read depth	2	14,599
nssv7397813	copy number variation	SAMN03783165	Sequencing	Read depth	2	14,756
nssv7397814	copy number variation	SAMN03783166	Sequencing	Read depth	1	14,670
nssv7397815	copy number variation	SAMN03783167	Sequencing	Read depth	2	14,675
nssv7397816	copy number variation	SAMEA1706748	Sequencing	Read depth	2	14,594
nssv7397817	copy number variation	SAMN03783168	Sequencing	Read depth	2	14,640
nssv7397818	copy number variation	SAMN03783169	Sequencing	Read depth	2	14,665
nssv7397819	copy number variation	SAMEA2164395	Sequencing	Read depth	1	14,620
nssv7397820	copy number variation	SAMN03783170	Sequencing	Read depth	2	14,618
nssv7397821	copy number variation	SAMN03783171	Sequencing	Read depth	2	14,288
nssv7397822	copy number variation	SAMN03783172	Sequencing	Read depth	2	14,778
nssv7397823	copy number variation	SAMN03783173	Sequencing	Read depth	2	14,664
nssv7397824	copy number variation	SAMN03783174	Sequencing	Read depth	1	14,675
nssv7397825	copy number variation	SAMEA1487354	Sequencing	Read depth	3	13,715
nssv7397826	copy number variation	SAMEA1706711	Sequencing	Read depth	2	14,408
nssv7397827	copy number variation	SAMN03783175	Sequencing	Read depth	1	14,638
nssv7397828	copy number variation	SAMN03783176	Sequencing	Read depth	1	14,619
nssv7397829	copy number variation	SAMN03783177	Sequencing	Read depth	1	14,680
nssv7397830	copy number variation	SAMN03783178	Sequencing	Read depth	1	14,666
nssv7397831	copy number variation	SAMN02603795	Sequencing	Read depth	2	14,463
nssv7397832	copy number variation	SAMEA2164252	Sequencing	Read depth	1	14,683
nssv7397833	copy number variation	SAMEA2164535	Sequencing	Read depth	1	14,624
nssv7397834	copy number variation	SAMEA1706737	Sequencing	Read depth	2	14,566
nssv7397835	copy number variation	SAMN03783179	Sequencing	Read depth	2	14,391
nssv7397836	copy number variation	SAMEA1706731	Sequencing	Read depth	2	14,659
nssv7397837	copy number variation	SAMEA1706716	Sequencing	Read depth	2	14,592
nssv7397838	copy number variation	SAMEA2164290	Sequencing	Read depth	1	14,669
nssv7397839	copy number variation	SAMEA2164480	Sequencing	Read depth	1	14,476
nssv7397840	copy number variation	SAMN03783180	Sequencing	Read depth	2	14,565
nssv7397841	copy number variation	SAMN03783181	Sequencing	Read depth	1	14,709
nssv7397842	copy number variation	SAMN03783182	Sequencing	Read depth	2	14,676
nssv7397843	copy number variation	SAMN00001633	Sequencing	Read depth	1	14,518
nssv7397844	copy number variation	SAMN00249816	Sequencing	Read depth	2	14,499
nssv7397845	copy number variation	SAMN00249822	Sequencing	Read depth	1	14,670
nssv7397846	copy number variation	SAMN03783183	Sequencing	Read depth	2	14,720
nssv7397847	copy number variation	SAMN00798868	Sequencing	Read depth	1	14,640
nssv7397848	copy number variation	SAMEA2164540	Sequencing	Read depth	1	14,622
nssv7397849	copy number variation	SAMEA1706757	Sequencing	Read depth	2	14,601
nssv7397850	copy number variation	SAMEA2164448	Sequencing	Read depth	1	14,687
nssv7397851	copy number variation	SAMN03783184	Sequencing	Read depth	2	14,718
nssv7397852	copy number variation	SAMEA1706740	Sequencing	Read depth	2	14,672
nssv7397853	copy number variation	SAMEA2164473	Sequencing	Read depth	1	14,607
nssv7397854	copy number variation	SAMEA2164552	Sequencing	Read depth	1	14,643
nssv7397855	copy number variation	SAMEA2164557	Sequencing	Read depth	1	14,620
nssv7397856	copy number variation	SAMEA1706733	Sequencing	Read depth	2	14,466
nssv7397857	copy number variation	SAMEA2164456	Sequencing	Read depth	1	14,524
nssv7398596	copy number variation	SAMN03783185	Sequencing	Read depth	2	14,639
nssv7398597	copy number variation	SAMEA2164550	Sequencing	Read depth	1	14,592
nssv7398598	copy number variation	SAMN03783186	Sequencing	Read depth	1	14,725
nssv7398599	copy number variation	SAMN03783187	Sequencing	Read depth	2	14,688
nssv7398600	copy number variation	SAMEA2164561	Sequencing	Read depth	1	14,640
nssv7398601	copy number variation	SAMN03783188	Sequencing	Read depth	2	14,511
nssv7398602	copy number variation	SAMEA2164415	Sequencing	Read depth	1	14,657
nssv7398603	copy number variation	SAMEA1706717	Sequencing	Read depth	2	14,656
nssv7398604	copy number variation	SAMEA2164522	Sequencing	Read depth	1	14,637
nssv7398605	copy number variation	SAMN03783189	Sequencing	Read depth	2	14,403
nssv7398606	copy number variation	SAMEA2164485	Sequencing	Read depth	1	14,504
nssv7398607	copy number variation	SAMEA2164489	Sequencing	Read depth	1	14,665
nssv7398608	copy number variation	SAMEA2164437	Sequencing	Read depth	1	14,735
nssv7398609	copy number variation	SAMEA1706762	Sequencing	Read depth	2	14,732
nssv7398610	copy number variation	SAMN03783190	Sequencing	Read depth	2	14,633
nssv7398611	copy number variation	SAMN03783191	Sequencing	Read depth	1	14,465
nssv7398612	copy number variation	SAMEA1706753	Sequencing	Read depth	2	14,641
nssv7398613	copy number variation	SAMN03783192	Sequencing	Read depth	2	14,679
nssv7398614	copy number variation	SAMN03783193	Sequencing	Read depth	1	14,596
nssv7398615	copy number variation	SAMN03783194	Sequencing	Read depth	1	14,677
nssv7398616	copy number variation	SAMN03783195	Sequencing	Read depth	1	14,628
nssv7398617	copy number variation	SAMEA2164192	Sequencing	Read depth	1	14,649
nssv7398618	copy number variation	SAMEA2164193	Sequencing	Read depth	1	14,406
nssv7398619	copy number variation	SAMEA2164195	Sequencing	Read depth	1	14,572
nssv7398620	copy number variation	SAMEA2164196	Sequencing	Read depth	1	14,636
nssv7398621	copy number variation	SAMEA2164198	Sequencing	Read depth	1	14,565
nssv7398622	copy number variation	SAMEA2164199	Sequencing	Read depth	1	14,646
nssv7398623	copy number variation	SAMEA2164200	Sequencing	Read depth	1	14,760
nssv7398624	copy number variation	SAMN03783196	Sequencing	Read depth	2	14,660
nssv7398625	copy number variation	SAMEA781343	Sequencing	Read depth	1	14,641
nssv7398626	copy number variation	SAMN03783197	Sequencing	Read depth	2	14,620
nssv7398627	copy number variation	SAMEA2164202	Sequencing	Read depth	1	14,644
nssv7398628	copy number variation	SAMN03783198	Sequencing	Read depth	2	14,559
nssv7398629	copy number variation	SAMEA2164203	Sequencing	Read depth	1	14,681
nssv7398630	copy number variation	SAMEA2164204	Sequencing	Read depth	1	14,586
nssv7398631	copy number variation	SAMEA2164029	Sequencing	Read depth	1	14,541
nssv7398632	copy number variation	SAMN01090933	Sequencing	Read depth	1	14,699
nssv7398633	copy number variation	SAMN01090934	Sequencing	Read depth	2	14,623
nssv7398634	copy number variation	SAMEA2163994	Sequencing	Read depth	1	14,633
nssv7398635	copy number variation	SAMEA2163998	Sequencing	Read depth	1	14,670
nssv7398636	copy number variation	SAMN03783199	Sequencing	Read depth	2	14,504
nssv7398637	copy number variation	SAMEA2164149	Sequencing	Read depth	1	14,597
nssv7398638	copy number variation	SAMEA2164052	Sequencing	Read depth	1	14,571
nssv7398639	copy number variation	SAMEA2164053	Sequencing	Read depth	1	14,694

Showing 100 of 226

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv7397802	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397803	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397804	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397805	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397806	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397807	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397808	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397809	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397810	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397811	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397812	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397813	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397814	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397815	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397816	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397817	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397818	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397819	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397820	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397821	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397822	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397823	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397824	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397825	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397826	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397827	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397828	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397829	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397830	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397831	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397832	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397833	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397834	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397835	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397836	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397837	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397838	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397839	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397840	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397841	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397842	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397843	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397844	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397845	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397846	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397847	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397848	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397849	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397850	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397851	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397852	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397853	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397854	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397855	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397856	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7397857	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398596	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398597	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398598	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398599	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398600	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398601	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398602	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398603	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398604	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398605	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398606	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398607	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398608	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398609	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398610	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398611	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398612	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398613	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398614	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398615	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398616	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398617	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398618	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398619	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398620	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398621	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398622	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398623	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398624	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398625	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398626	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398627	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398628	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398629	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398630	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398631	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398632	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398633	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398634	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398635	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398636	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398637	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398638	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761
nssv7398639	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	88,395,258	88,414,761

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dbVar

Database of genomic structural variation

nsv1187800

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Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant