nsv2360158
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:79
- Description:MOTIF=[TCTT],NS=[299],REF=[19.75],RL=[79],RU=[
TCTT],RPA=[17.75,18.25,18.75],QUAL=[42268.9] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 333 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 333 SVs from 31 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2360158 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 12,433,513 | 12,433,591 |
| nsv2360158 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 12,433,625 | 12,433,703 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv11862744 | short tandem repeat | (TCTT) 17.75 | Sequencing | Genotyping |
| nssv11864907 | short tandem repeat | (TCTT) 18.75 | Sequencing | Genotyping |
| nssv12000723 | short tandem repeat | (TCTT) 18.25 | Sequencing | Genotyping |
| nssv12000724 | short tandem repeat | (TCTT) 19.75 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv11862744 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 12,433,513 | 12,433,591 |
| nssv11864907 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 12,433,513 | 12,433,591 |
| nssv12000723 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 12,433,513 | 12,433,591 |
| nssv12000724 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 12,433,513 | 12,433,591 |
| nssv11862744 | Submitted genomic | GRCh37 (hg19) | NC_000005.9 | Chr5 | 12,433,625 | 12,433,703 | ||
| nssv11864907 | Submitted genomic | GRCh37 (hg19) | NC_000005.9 | Chr5 | 12,433,625 | 12,433,703 | ||
| nssv12000723 | Submitted genomic | GRCh37 (hg19) | NC_000005.9 | Chr5 | 12,433,625 | 12,433,703 | ||
| nssv12000724 | Submitted genomic | GRCh37 (hg19) | NC_000005.9 | Chr5 | 12,433,625 | 12,433,703 |