nsv2782618
- Organism: Homo sapiens
- Study:nstd132 (Walker et al. 2017)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:323,033
- Publication(s):Walker et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1517 SVs from 86 studies. See in: genome view
Overlapping variant regions from other studies: 1517 SVs from 86 studies. See in: genome view
Overlapping variant regions from other studies: 583 SVs from 29 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2782618 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 14,489,293 | 14,812,325 |
| nsv2782618 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 14,346,802 | 14,669,834 |
| nsv2782618 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000008.9 | Chr8 | 14,391,173 | 14,714,205 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv13676109 | copy number loss | CGPQ-2145 | SNP array | Genotyping | 23 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv13676109 | Remapped | Perfect | NC_000008.11:g.(?_ 14489293)_(1481232 5_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 14,489,293 | 14,812,325 |
| nssv13676109 | Remapped | Perfect | NC_000008.10:g.(?_ 14346802)_(1466983 4_?)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 14,346,802 | 14,669,834 |
| nssv13676109 | Submitted genomic | NC_000008.9:g.(?_1 4391173)_(14714205 _?)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 14,391,173 | 14,714,205 |