nsv2783192
- Organism: Homo sapiens
- Study:nstd132 (Walker et al. 2017)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:401,372
- Publication(s):Walker et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 992 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 985 SVs from 68 studies. See in: genome view
Overlapping variant regions from other studies: 582 SVs from 38 studies. See in: genome view
Overlapping variant regions from other studies: 321 SVs from 22 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2783192 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 115,362,456 | 115,763,827 |
| nsv2783192 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000010.10 | Chr10 | 117,121,966 | 117,523,338 |
| nsv2783192 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_004775432.1 | Chr10|NW_0 04775432.1 | 335,920 | 737,292 |
| nsv2783192 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 117,111,956 | 117,513,328 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv13661388 | copy number loss | CGPQ-2145 | SNP array | Genotyping | 23 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv13661388 | Remapped | Perfect | NC_000010.11:g.(?_ 115362456)_(115763 827_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 115,362,456 | 115,763,827 |
| nssv13661388 | Remapped | Perfect | NW_004775432.1:g.( ?_335920)_(737292_ ?)del | GRCh37.p13 | First Pass | NW_004775432.1 | Chr10|NW_0 04775432.1 | 335,920 | 737,292 |
| nssv13661388 | Remapped | Perfect | NC_000010.10:g.(?_ 117121966)_(117523 338_?)del | GRCh37.p13 | Second Pass | NC_000010.10 | Chr10 | 117,121,966 | 117,523,338 |
| nssv13661388 | Submitted genomic | NC_000010.9:g.(?_1 17111956)_(1175133 28_?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 117,111,956 | 117,513,328 |