nsv2783654
- Organism: Homo sapiens
- Study:nstd132 (Walker et al. 2017)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:384,423
- Publication(s):Walker et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1211 SVs from 86 studies. See in: genome view
Overlapping variant regions from other studies: 1211 SVs from 86 studies. See in: genome view
Overlapping variant regions from other studies: 482 SVs from 25 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2783654 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 153,858,211 | 154,242,633 |
| nsv2783654 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 154,714,724 | 155,099,146 |
| nsv2783654 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000002.10 | Chr2 | 154,422,970 | 154,807,392 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv13668330 | copy number loss | CGPQ-1613 | SNP array | Genotyping | 55 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv13668330 | Remapped | Perfect | NC_000002.12:g.(?_ 153858211)_(154242 633_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 153,858,211 | 154,242,633 |
| nssv13668330 | Remapped | Perfect | NC_000002.11:g.(?_ 154714724)_(155099 146_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 154,714,724 | 155,099,146 |
| nssv13668330 | Submitted genomic | NC_000002.10:g.(?_ 154422970)_(154807 392_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 154,422,970 | 154,807,392 |