nsv2785506
- Organism: Homo sapiens
- Study:nstd132 (Walker et al. 2017)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:307,699
- Publication(s):Walker et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2350 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 2350 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 609 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2785506 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 66,530,836 | 66,838,534 |
| nsv2785506 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 68,290,594 | 68,598,292 |
| nsv2785506 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 67,960,600 | 68,268,298 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv13661361 | copy number loss | CGPQ-1337 | SNP array | Genotyping | 12 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv13661361 | Remapped | Perfect | NC_000010.11:g.(?_ 66530836)_(6683853 4_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 66,530,836 | 66,838,534 |
| nssv13661361 | Remapped | Perfect | NC_000010.10:g.(?_ 68290594)_(6859829 2_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 68,290,594 | 68,598,292 |
| nssv13661361 | Submitted genomic | NC_000010.9:g.(?_6 7960600)_(68268298 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 67,960,600 | 68,268,298 |