nsv30688
- Organism: Homo sapiens
- Study:nstd6 (Mills et al. 2006)
- Variant Type:insertion
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Mills et al. 2006
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 107 SVs from 37 studies. See in: genome view
Overlapping variant regions from other studies: 8 SVs from 8 studies. See in: genome view
Overlapping variant regions from other studies: 111 SVs from 37 studies. See in: genome view
Overlapping variant regions from other studies: 5 SVs from 5 studies. See in: genome view
Overlapping variant regions from other studies: 3 SVs from 3 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv30688 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 56,375,274 | 56,375,274 |
| nsv30688 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NW_003871073.1 | Chr11|NW_0 03871073.1 | 186,024 | 186,024 |
| nsv30688 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 56,142,750 | 56,142,750 |
| nsv30688 | Remapped | Perfect | GRCh37.p13 | PATCHES | Second Pass | NW_003871073.1 | Chr11|NW_0 03871073.1 | 186,024 | 186,024 |
| nsv30688 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000011.8 | Chr11 | 55,899,326 | 55,899,326 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv49266 | insertion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv49266 | Remapped | Perfect | NW_003871073.1:g.1 86024_186025insT | GRCh38.p12 | Second Pass | NW_003871073.1 | Chr11|NW_0 03871073.1 | 186,024 | 186,024 |
| nssv49266 | Remapped | Perfect | NC_000011.10:g.563 75274_56375275insT | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 56,375,274 | 56,375,274 |
| nssv49266 | Remapped | Perfect | NW_003871073.1:g.1 86024_186025insT | GRCh37.p13 | Second Pass | NW_003871073.1 | Chr11|NW_0 03871073.1 | 186,024 | 186,024 |
| nssv49266 | Remapped | Perfect | NC_000011.9:g.5614 2750_56142751insT | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 56,142,750 | 56,142,750 |
| nssv49266 | Submitted genomic | NC_000011.8:g.5589 9326_55899327insT | NCBI35 (hg17) | NC_000011.8 | Chr11 | 55,899,326 | 55,899,326 |