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dbVar

Database of genomic structural variation

nsv3212767

Organism: Homo sapiens

Study:nstd152 (Chaisson et al. 2019)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38 (hg38)

Variant Calls:9
Validation:Not tested
Clinical Assertions: No
Region Size:23,792

Publication(s):Chaisson et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1590 SVs from 93 studies. See in: genome view

Submitted genomic25,404,935-25,429,384

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv3212767	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000022.11	Chr22	25,405,264 (-329, +329)	25,429,055 (-329, +329)
nsv3212767	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000022.10	Chr22	25,801,231 (-329, +329)	25,825,022 (-329, +329)

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv14304707	duplication	HG00512	Sequencing	Sequence alignment	3	13,827
nssv14304708	duplication	SAMN00006466	Sequencing	Sequence alignment	2	14,137
nssv14304709	duplication	HG00514	Sequencing	Sequence alignment	3	39,861
nssv14304710	duplication	SAMN00006579	Sequencing	Sequence alignment	2	13,953
nssv14304711	duplication	SAMN00006580	Sequencing	Sequence alignment	2	14,212
nssv14304712	duplication	SAMN00006581	Sequencing	Sequence alignment	2	41,185
nssv14304713	duplication	SAMN00001694	Sequencing	Sequence alignment	2	16,419
nssv14304714	duplication	SAMN00001695	Sequencing	Sequence alignment	2	15,732
nssv14304715	duplication	SAMN00001696	Sequencing	Sequence alignment	2	45,591

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv14304707	Submitted genomic		NC_000022.11:g.(25 404935_25405593)_( 25428726_25429384) dup	GRCh38 (hg38)		NC_000022.11	Chr22	25,405,264 (-329, +329)	25,429,055 (-329, +329)
nssv14304708	Submitted genomic		NC_000022.11:g.(25 404935_25405593)_( 25428726_25429384) dup	GRCh38 (hg38)		NC_000022.11	Chr22	25,405,264 (-329, +329)	25,429,055 (-329, +329)
nssv14304709	Submitted genomic		NC_000022.11:g.(25 404935_25405593)_( 25428726_25429384) dup	GRCh38 (hg38)		NC_000022.11	Chr22	25,405,264 (-329, +329)	25,429,055 (-329, +329)
nssv14304710	Submitted genomic		NC_000022.11:g.(25 404935_25405593)_( 25428726_25429384) dup	GRCh38 (hg38)		NC_000022.11	Chr22	25,405,264 (-329, +329)	25,429,055 (-329, +329)
nssv14304711	Submitted genomic		NC_000022.11:g.(25 404935_25405593)_( 25428726_25429384) dup	GRCh38 (hg38)		NC_000022.11	Chr22	25,405,264 (-329, +329)	25,429,055 (-329, +329)
nssv14304712	Submitted genomic		NC_000022.11:g.(25 404935_25405593)_( 25428726_25429384) dup	GRCh38 (hg38)		NC_000022.11	Chr22	25,405,264 (-329, +329)	25,429,055 (-329, +329)
nssv14304713	Submitted genomic		NC_000022.11:g.(25 404935_25405593)_( 25428726_25429384) dup	GRCh38 (hg38)		NC_000022.11	Chr22	25,405,264 (-329, +329)	25,429,055 (-329, +329)
nssv14304714	Submitted genomic		NC_000022.11:g.(25 404935_25405593)_( 25428726_25429384) dup	GRCh38 (hg38)		NC_000022.11	Chr22	25,405,264 (-329, +329)	25,429,055 (-329, +329)
nssv14304715	Submitted genomic		NC_000022.11:g.(25 404935_25405593)_( 25428726_25429384) dup	GRCh38 (hg38)		NC_000022.11	Chr22	25,405,264 (-329, +329)	25,429,055 (-329, +329)
nssv14304707	Remapped	Perfect	NC_000022.10:g.(25 800902_25801560)_( 25824693_25825351) dup	GRCh37.p13	First Pass	NC_000022.10	Chr22	25,801,231 (-329, +329)	25,825,022 (-329, +329)
nssv14304708	Remapped	Perfect	NC_000022.10:g.(25 800902_25801560)_( 25824693_25825351) dup	GRCh37.p13	First Pass	NC_000022.10	Chr22	25,801,231 (-329, +329)	25,825,022 (-329, +329)
nssv14304709	Remapped	Perfect	NC_000022.10:g.(25 800902_25801560)_( 25824693_25825351) dup	GRCh37.p13	First Pass	NC_000022.10	Chr22	25,801,231 (-329, +329)	25,825,022 (-329, +329)
nssv14304710	Remapped	Perfect	NC_000022.10:g.(25 800902_25801560)_( 25824693_25825351) dup	GRCh37.p13	First Pass	NC_000022.10	Chr22	25,801,231 (-329, +329)	25,825,022 (-329, +329)
nssv14304711	Remapped	Perfect	NC_000022.10:g.(25 800902_25801560)_( 25824693_25825351) dup	GRCh37.p13	First Pass	NC_000022.10	Chr22	25,801,231 (-329, +329)	25,825,022 (-329, +329)
nssv14304712	Remapped	Perfect	NC_000022.10:g.(25 800902_25801560)_( 25824693_25825351) dup	GRCh37.p13	First Pass	NC_000022.10	Chr22	25,801,231 (-329, +329)	25,825,022 (-329, +329)
nssv14304713	Remapped	Perfect	NC_000022.10:g.(25 800902_25801560)_( 25824693_25825351) dup	GRCh37.p13	First Pass	NC_000022.10	Chr22	25,801,231 (-329, +329)	25,825,022 (-329, +329)
nssv14304714	Remapped	Perfect	NC_000022.10:g.(25 800902_25801560)_( 25824693_25825351) dup	GRCh37.p13	First Pass	NC_000022.10	Chr22	25,801,231 (-329, +329)	25,825,022 (-329, +329)
nssv14304715	Remapped	Perfect	NC_000022.10:g.(25 800902_25801560)_( 25824693_25825351) dup	GRCh37.p13	First Pass	NC_000022.10	Chr22	25,801,231 (-329, +329)	25,825,022 (-329, +329)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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