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dbVar

Database of genomic structural variation

nsv4365036

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:56,642

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 539 SVs from 24 studies. See in: genome view

Remapped(Score: Perfect):23,404,795-23,461,436

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4365036	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000024.10	ChrY	23,404,795	23,461,436
nsv4365036	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000024.9	ChrY	25,550,942	25,607,583

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15629631	copy number loss	1-0583-003	SNP array	Genotyping	23
nssv15631006	copy number loss	1-0637-003	SNP array	Genotyping	28
nssv15662242	copy number loss	5-0119-003	SNP array	Genotyping	27
nssv15665409	copy number loss	7-0054-003	SNP array	Genotyping	38

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15629631	Remapped	Perfect	NC_000024.10:g.(?_ 23404795)_(2346143 6_?)del	GRCh38.p12	First Pass	NC_000024.10	ChrY	23,404,795	23,461,436
nssv15631006	Remapped	Perfect	NC_000024.10:g.(?_ 23404795)_(2346143 6_?)del	GRCh38.p12	First Pass	NC_000024.10	ChrY	23,404,795	23,461,436
nssv15662242	Remapped	Perfect	NC_000024.10:g.(?_ 23404795)_(2346143 6_?)del	GRCh38.p12	First Pass	NC_000024.10	ChrY	23,404,795	23,461,436
nssv15665409	Remapped	Perfect	NC_000024.10:g.(?_ 23404795)_(2346143 6_?)del	GRCh38.p12	First Pass	NC_000024.10	ChrY	23,404,795	23,461,436
nssv15629631	Submitted genomic		NC_000024.9:g.(?_2 5550942)_(25607583 _?)del	GRCh37 (hg19)		NC_000024.9	ChrY	25,550,942	25,607,583
nssv15631006	Submitted genomic		NC_000024.9:g.(?_2 5550942)_(25607583 _?)del	GRCh37 (hg19)		NC_000024.9	ChrY	25,550,942	25,607,583
nssv15662242	Submitted genomic		NC_000024.9:g.(?_2 5550942)_(25607583 _?)del	GRCh37 (hg19)		NC_000024.9	ChrY	25,550,942	25,607,583
nssv15665409	Submitted genomic		NC_000024.9:g.(?_2 5550942)_(25607583 _?)del	GRCh37 (hg19)		NC_000024.9	ChrY	25,550,942	25,607,583

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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