nsv4365280

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:39
Validation:Not tested
Clinical Assertions: No
Region Size:72,604

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 2592 SVs from 101 studies. See in: genome view

Remapped(Score: Perfect):78,252,864-78,325,467

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4365280	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nsv4365280	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000006.11	Chr6	78,962,581	79,035,184

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15611593	copy number loss	1-0112-001	SNP array	Genotyping	16
nssv15612714	copy number loss	1-0645-003	SNP array	Genotyping	15
nssv15614221	copy number loss	1-0715-003	SNP array	Genotyping	18
nssv15614336	copy number loss	1-0743-003	SNP array	Genotyping	23
nssv15618952	copy number loss	1-0903-003	SNP array	Genotyping	20
nssv15619780	copy number loss	1-0907-003	SNP array	Genotyping	25
nssv15621771	copy number loss	1-1010-004	SNP array	Genotyping	27
nssv15624300	copy number loss	1-0043-003	SNP array	Genotyping	27
nssv15629608	copy number loss	1-0580-004	SNP array	Genotyping	25
nssv15630622	copy number loss	1-0598-003	SNP array	Genotyping	17
nssv15633067	copy number loss	10-1104-003	SNP array	Genotyping	23
nssv15633090	copy number loss	10-1104-004	SNP array	Genotyping	21
nssv15633881	copy number loss	10-1149-003	SNP array	Genotyping	17
nssv15635704	copy number loss	11-0052-003	SNP array	Genotyping	20
nssv15639228	copy number loss	14-0284-001	SNP array	Genotyping	24
nssv15640448	copy number loss	14-0286-003	SNP array	Genotyping	22
nssv15641375	copy number loss	14-0344-004	SNP array	Genotyping	27
nssv15642671	copy number loss	14-0356-003	SNP array	Genotyping	29
nssv15645122	copy number loss	2-0323-004	SNP array	Genotyping	21
nssv15647214	copy number loss	2-1085-002	SNP array	Genotyping	24
nssv15648200	copy number loss	2-1235-002	SNP array	Genotyping	23
nssv15651374	copy number loss	2-1428-002	SNP array	Genotyping	32
nssv15653267	copy number loss	2-1640-003	SNP array	Genotyping	27
nssv15656926	copy number loss	3-0664-000	SNP array	Genotyping	26
nssv15667105	copy number loss	7-0118-003	SNP array	Genotyping	21
nssv15678054	copy number loss	241609	SNP array	Genotyping	24
nssv15680628	copy number loss	214104	SNP array	Genotyping	18
nssv15682114	copy number loss	218114	SNP array	Genotyping	23
nssv15682324	copy number loss	OCD11-S_896192	SNP array	Genotyping	17
nssv15685317	copy number loss	OCD117-B_1699	SNP array	Genotyping	29
nssv15686906	copy number loss	OCD37-S_0625-0201-1	SNP array	Genotyping	20
nssv15688364	copy number loss	OCD5-S_896111	SNP array	Genotyping	13
nssv15688374	copy number loss	OCD5-S_896113	SNP array	Genotyping	19
nssv15691130	copy number loss	OCD26-896511	SNP array	Genotyping	28
nssv15694952	copy number loss	220177	SNP array	Genotyping	25
nssv15699786	copy number loss	226267	SNP array	Genotyping	35
nssv15700815	copy number loss	214174	SNP array	Genotyping	18
nssv15702740	copy number loss	197706	SNP array	Genotyping	18
nssv15702807	copy number loss	200420	SNP array	Genotyping	24

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15611593	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15612714	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15614221	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15614336	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15618952	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15619780	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15621771	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15624300	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15629608	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15630622	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15633067	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15633090	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15633881	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15635704	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15639228	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15640448	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15641375	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15642671	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15645122	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15647214	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15648200	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15651374	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15653267	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15656926	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15667105	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15678054	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15680628	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15682114	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15682324	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15685317	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15686906	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15688364	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15688374	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15691130	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15694952	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15699786	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15700815	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15702740	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15702807	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7832546 7_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,325,467
nssv15611593	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15612714	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15614221	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15614336	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15618952	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15619780	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15621771	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15624300	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15629608	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15630622	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15633067	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15633090	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15633881	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15635704	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15639228	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15640448	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15641375	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15642671	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15645122	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15647214	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15648200	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15651374	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15653267	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15656926	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15667105	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15678054	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15680628	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15682114	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15682324	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15685317	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15686906	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15688364	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15688374	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15691130	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15694952	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15699786	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15700815	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15702740	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184
nssv15702807	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7903518 4_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,035,184

dbVar

Database of genomic structural variation

nsv4365280

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant