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dbVar

Database of genomic structural variation

nsv4365579

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:7
Validation:Not tested
Clinical Assertions: No
Region Size:93,108

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 553 SVs from 55 studies. See in: genome view

Remapped(Score: Perfect):54,934,144-55,027,251

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4365579	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	54,934,144	55,027,251
nsv4365579	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000011.9	Chr11	54,701,620	54,794,727

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15625108	copy number gain	1-0376-001	SNP array	Genotyping	17
nssv15650402	copy number gain	2-1478-001	SNP array	Genotyping	16
nssv15666286	copy number gain	5-0106-003	SNP array	Genotyping	21
nssv15669059	copy number gain	7-0131-003	SNP array	Genotyping	31
nssv15674941	copy number gain	206765	SNP array	Genotyping	32
nssv15689814	copy number gain	OCD1150-S_HAM473	SNP array	Genotyping	24
nssv15690556	copy number gain	OCD146-188610	SNP array	Genotyping	24

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15625108	Remapped	Perfect	NC_000011.10:g.(?_ 54934144)_(5502725 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	54,934,144	55,027,251
nssv15650402	Remapped	Perfect	NC_000011.10:g.(?_ 54934144)_(5502725 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	54,934,144	55,027,251
nssv15666286	Remapped	Perfect	NC_000011.10:g.(?_ 54934144)_(5502725 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	54,934,144	55,027,251
nssv15669059	Remapped	Perfect	NC_000011.10:g.(?_ 54934144)_(5502725 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	54,934,144	55,027,251
nssv15674941	Remapped	Perfect	NC_000011.10:g.(?_ 54934144)_(5502725 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	54,934,144	55,027,251
nssv15689814	Remapped	Perfect	NC_000011.10:g.(?_ 54934144)_(5502725 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	54,934,144	55,027,251
nssv15690556	Remapped	Perfect	NC_000011.10:g.(?_ 54934144)_(5502725 1_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	54,934,144	55,027,251
nssv15625108	Submitted genomic		NC_000011.9:g.(?_5 4701620)_(54794727 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	54,701,620	54,794,727
nssv15650402	Submitted genomic		NC_000011.9:g.(?_5 4701620)_(54794727 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	54,701,620	54,794,727
nssv15666286	Submitted genomic		NC_000011.9:g.(?_5 4701620)_(54794727 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	54,701,620	54,794,727
nssv15669059	Submitted genomic		NC_000011.9:g.(?_5 4701620)_(54794727 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	54,701,620	54,794,727
nssv15674941	Submitted genomic		NC_000011.9:g.(?_5 4701620)_(54794727 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	54,701,620	54,794,727
nssv15689814	Submitted genomic		NC_000011.9:g.(?_5 4701620)_(54794727 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	54,701,620	54,794,727
nssv15690556	Submitted genomic		NC_000011.9:g.(?_5 4701620)_(54794727 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	54,701,620	54,794,727

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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