nsv4365609
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:38
- Validation:Not tested
- Clinical Assertions: No
- Region Size:177,614
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1180 SVs from 34 studies. See in: genome view
Overlapping variant regions from other studies: 1181 SVs from 34 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4365609 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nsv4365609 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15612562 | copy number loss | 1-0698-003 | SNP array | Genotyping | 23 |
| nssv15612665 | copy number loss | 1-0704-005 | SNP array | Genotyping | 21 |
| nssv15617379 | copy number loss | 1-0842-003 | SNP array | Genotyping | 22 |
| nssv15618870 | copy number loss | 1-0891-003 | SNP array | Genotyping | 28 |
| nssv15619394 | copy number loss | 1-0918-003 | SNP array | Genotyping | 17 |
| nssv15619584 | copy number loss | 1-0952-004 | SNP array | Genotyping | 26 |
| nssv15620742 | copy number loss | 1-0998-003 | SNP array | Genotyping | 24 |
| nssv15621284 | copy number loss | 1-1011-003 | SNP array | Genotyping | 19 |
| nssv15621934 | copy number loss | 1-0973-003 | SNP array | Genotyping | 17 |
| nssv15624955 | copy number loss | 1-0045-004 | SNP array | Genotyping | 27 |
| nssv15625310 | copy number loss | 1-0318-004 | SNP array | Genotyping | 20 |
| nssv15625336 | copy number loss | 1-0318-003 | SNP array | Genotyping | 27 |
| nssv15645103 | copy number loss | 2-0323-003 | SNP array | Genotyping | 16 |
| nssv15645124 | copy number loss | 2-0323-004 | SNP array | Genotyping | 21 |
| nssv15646663 | copy number loss | 2-1272-003 | SNP array | Genotyping | 15 |
| nssv15648312 | copy number loss | 2-1276-002 | SNP array | Genotyping | 14 |
| nssv15648764 | copy number loss | 2-1283-004 | SNP array | Genotyping | 26 |
| nssv15651195 | copy number loss | 2-1363-002 | SNP array | Genotyping | 25 |
| nssv15654527 | copy number loss | 2-1735-003 | SNP array | Genotyping | 26 |
| nssv15655772 | copy number loss | 2-1721-003 | SNP array | Genotyping | 29 |
| nssv15655787 | copy number loss | 2-1722-003 | SNP array | Genotyping | 15 |
| nssv15656213 | copy number loss | 3-0708-000 | SNP array | Genotyping | 21 |
| nssv15657493 | copy number loss | 4-0027-002 | SNP array | Genotyping | 22 |
| nssv15661096 | copy number loss | 4-0078-005 | SNP array | Genotyping | 16 |
| nssv15661533 | copy number loss | 4-0027-003 | SNP array | Genotyping | 23 |
| nssv15663122 | copy number loss | 4-0050-003 | SNP array | Genotyping | 16 |
| nssv15664666 | copy number loss | 4-0078-002 | SNP array | Genotyping | 34 |
| nssv15664683 | copy number loss | 4-0078-003 | SNP array | Genotyping | 17 |
| nssv15665784 | copy number loss | 7-0094-003 | SNP array | Genotyping | 24 |
| nssv15668430 | copy number loss | 7-0204-003 | SNP array | Genotyping | 22 |
| nssv15669748 | copy number loss | 7-0243-003 | SNP array | Genotyping | 24 |
| nssv15674026 | copy number loss | 9-0030-003 | SNP array | Genotyping | 20 |
| nssv15677336 | copy number loss | 242264S | SNP array | Genotyping | 22 |
| nssv15678011 | copy number loss | 240256S | SNP array | Genotyping | 19 |
| nssv15678059 | copy number loss | 241609 | SNP array | Genotyping | 24 |
| nssv15678993 | copy number loss | 240259S | SNP array | Genotyping | 18 |
| nssv15695873 | copy number loss | 212974 | SNP array | Genotyping | 20 |
| nssv15695902 | copy number loss | 214792 | SNP array | Genotyping | 22 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15612562 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15612665 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15617379 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15618870 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15619394 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15619584 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15620742 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15621284 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15621934 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15624955 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15625310 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15625336 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15645103 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15645124 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15646663 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15648312 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15648764 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15651195 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15654527 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15655772 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15655787 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15656213 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15657493 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15661096 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15661533 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15663122 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15664666 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15664683 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15665784 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15668430 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15669748 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15674026 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15677336 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15678011 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15678059 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15678993 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15695873 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15695902 | Remapped | Perfect | NC_000024.10:g.(?_ 20149845)_(2032745 8_?)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 20,149,845 | 20,327,458 |
| nssv15612562 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15612665 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15617379 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15618870 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15619394 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15619584 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15620742 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15621284 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15621934 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15624955 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15625310 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15625336 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15645103 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15645124 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15646663 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15648312 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15648764 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15651195 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15654527 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15655772 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15655787 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15656213 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15657493 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15661096 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15661533 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15663122 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15664666 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15664683 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15665784 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15668430 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15669748 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15674026 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15677336 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15678011 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15678059 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15678993 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15695873 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 | ||
| nssv15695902 | Submitted genomic | NC_000024.9:g.(?_2 2311731)_(22489344 _?)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 22,311,731 | 22,489,344 |