nsv4366593

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:13
Validation:Not tested
Clinical Assertions: No
Region Size:32,379

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 2080 SVs from 101 studies. See in: genome view

Remapped(Score: Perfect):55,635,325-55,667,703

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4366593	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	55,635,325	55,667,703
nsv4366593	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000011.9	Chr11	55,402,801	55,435,179

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15612894	copy number gain	1-0682-003	SNP array	Genotyping	21
nssv15621270	copy number gain	1-1011-003	SNP array	Genotyping	19
nssv15628182	copy number gain	1-0467-004	SNP array	Genotyping	17
nssv15634574	copy number gain	12-4264-001	SNP array	Genotyping	25
nssv15643666	copy number gain	2-0018-004	SNP array	Genotyping	16
nssv15654678	copy number gain	3-0192-000	SNP array	Genotyping	18
nssv15671273	copy number gain	7-0280-003	SNP array	Genotyping	21
nssv15677601	copy number gain	215806	SNP array	Genotyping	23
nssv15681330	copy number gain	OCD1010-0625-9794-3	SNP array	Genotyping	22
nssv15684432	copy number gain	OCD1142-896953	SNP array	Genotyping	24
nssv15685594	copy number gain	OCD168-8961231	SNP array	Genotyping	24
nssv15685978	copy number gain	OCD175-8961151	SNP array	Genotyping	22
nssv15699234	copy number gain	213838	SNP array	Genotyping	25

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15612894	Remapped	Perfect	NC_000011.10:g.(?_ 55635325)_(5566770 3_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,635,325	55,667,703
nssv15621270	Remapped	Perfect	NC_000011.10:g.(?_ 55635325)_(5566770 3_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,635,325	55,667,703
nssv15628182	Remapped	Perfect	NC_000011.10:g.(?_ 55635325)_(5566770 3_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,635,325	55,667,703
nssv15634574	Remapped	Perfect	NC_000011.10:g.(?_ 55635325)_(5566770 3_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,635,325	55,667,703
nssv15643666	Remapped	Perfect	NC_000011.10:g.(?_ 55635325)_(5566770 3_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,635,325	55,667,703
nssv15654678	Remapped	Perfect	NC_000011.10:g.(?_ 55635325)_(5566770 3_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,635,325	55,667,703
nssv15671273	Remapped	Perfect	NC_000011.10:g.(?_ 55635325)_(5566770 3_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,635,325	55,667,703
nssv15677601	Remapped	Perfect	NC_000011.10:g.(?_ 55635325)_(5566770 3_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,635,325	55,667,703
nssv15681330	Remapped	Perfect	NC_000011.10:g.(?_ 55635325)_(5566770 3_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,635,325	55,667,703
nssv15684432	Remapped	Perfect	NC_000011.10:g.(?_ 55635325)_(5566770 3_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,635,325	55,667,703
nssv15685594	Remapped	Perfect	NC_000011.10:g.(?_ 55635325)_(5566770 3_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,635,325	55,667,703
nssv15685978	Remapped	Perfect	NC_000011.10:g.(?_ 55635325)_(5566770 3_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,635,325	55,667,703
nssv15699234	Remapped	Perfect	NC_000011.10:g.(?_ 55635325)_(5566770 3_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	55,635,325	55,667,703
nssv15612894	Submitted genomic		NC_000011.9:g.(?_5 5402801)_(55435179 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,402,801	55,435,179
nssv15621270	Submitted genomic		NC_000011.9:g.(?_5 5402801)_(55435179 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,402,801	55,435,179
nssv15628182	Submitted genomic		NC_000011.9:g.(?_5 5402801)_(55435179 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,402,801	55,435,179
nssv15634574	Submitted genomic		NC_000011.9:g.(?_5 5402801)_(55435179 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,402,801	55,435,179
nssv15643666	Submitted genomic		NC_000011.9:g.(?_5 5402801)_(55435179 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,402,801	55,435,179
nssv15654678	Submitted genomic		NC_000011.9:g.(?_5 5402801)_(55435179 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,402,801	55,435,179
nssv15671273	Submitted genomic		NC_000011.9:g.(?_5 5402801)_(55435179 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,402,801	55,435,179
nssv15677601	Submitted genomic		NC_000011.9:g.(?_5 5402801)_(55435179 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,402,801	55,435,179
nssv15681330	Submitted genomic		NC_000011.9:g.(?_5 5402801)_(55435179 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,402,801	55,435,179
nssv15684432	Submitted genomic		NC_000011.9:g.(?_5 5402801)_(55435179 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,402,801	55,435,179
nssv15685594	Submitted genomic		NC_000011.9:g.(?_5 5402801)_(55435179 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,402,801	55,435,179
nssv15685978	Submitted genomic		NC_000011.9:g.(?_5 5402801)_(55435179 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,402,801	55,435,179
nssv15699234	Submitted genomic		NC_000011.9:g.(?_5 5402801)_(55435179 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	55,402,801	55,435,179

dbVar

Database of genomic structural variation

nsv4366593

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant