nsv4367386

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:50
Validation:Not tested
Clinical Assertions: No
Region Size:37,766

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1197 SVs from 84 studies. See in: genome view

Remapped(Score: Perfect):257,061-294,826

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4367386	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	257,061	294,826
nsv4367386	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000006.11	Chr6	257,061	294,826

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15611993	copy number loss	1-0639-004	SNP array	Genotyping	16
nssv15618562	copy number loss	1-0902-003	SNP array	Genotyping	22
nssv15620127	copy number loss	1-0940-003	SNP array	Genotyping	24
nssv15620776	copy number gain	1-1002-003	SNP array	Genotyping	26
nssv15621305	copy number loss	1-1012-003	SNP array	Genotyping	25
nssv15621439	copy number loss	1-1015-004	SNP array	Genotyping	23
nssv15621816	copy number loss	1-1037-003	SNP array	Genotyping	24
nssv15622316	copy number gain	1-1027-003	SNP array	Genotyping	23
nssv15622353	copy number gain	1-1029-003	SNP array	Genotyping	15
nssv15623183	copy number loss	1-0224-002	SNP array	Genotyping	25
nssv15624803	copy number loss	1-0403-003	SNP array	Genotyping	31
nssv15625020	copy number loss	1-0344-003	SNP array	Genotyping	26
nssv15625724	copy number loss	1-0346-001	SNP array	Genotyping	24
nssv15626488	copy number loss	1-0441-001	SNP array	Genotyping	19
nssv15627851	copy number loss	1-0455-001	SNP array	Genotyping	28
nssv15628667	copy number loss	1-0059-004	SNP array	Genotyping	20
nssv15630055	copy number loss	1-0632-001	SNP array	Genotyping	17
nssv15635145	copy number loss	13-0029-002	SNP array	Genotyping	18
nssv15637884	copy number loss	14-0025-002	SNP array	Genotyping	24
nssv15639142	copy number loss	14-0250-003	SNP array	Genotyping	19
nssv15641322	copy number gain	14-0312-004	SNP array	Genotyping	22
nssv15642384	copy number loss	15-1117-002	SNP array	Genotyping	26
nssv15642618	copy number loss	15-1133-002	SNP array	Genotyping	14
nssv15646959	copy number loss	2-1094-005	SNP array	Genotyping	17
nssv15647011	copy number loss	2-1213-002	SNP array	Genotyping	24
nssv15649452	copy number loss	2-1401-003	SNP array	Genotyping	30
nssv15652154	copy number loss	2-1522-002	SNP array	Genotyping	18
nssv15652717	copy number loss	2-1512-001	SNP array	Genotyping	17
nssv15652909	copy number loss	2-1549-003	SNP array	Genotyping	23
nssv15654582	copy number gain	2-1738-003	SNP array	Genotyping	22
nssv15656299	copy number loss	4-0001-004	SNP array	Genotyping	19
nssv15657145	copy number loss	2-1759-003	SNP array	Genotyping	22
nssv15657558	copy number loss	4-0028-002	SNP array	Genotyping	25
nssv15658249	copy number loss	4-0001-005	SNP array	Genotyping	17
nssv15659232	copy number loss	4-0074-001	SNP array	Genotyping	11
nssv15660852	copy number loss	4-0052-001	SNP array	Genotyping	20
nssv15661020	copy number loss	4-0069-004	SNP array	Genotyping	21
nssv15661485	copy number loss	5-0110-002	SNP array	Genotyping	22
nssv15662398	copy number loss	5-0001-001	SNP array	Genotyping	25
nssv15668047	copy number loss	7-0164-003	SNP array	Genotyping	22
nssv15669580	copy number gain	7-0269-003	SNP array	Genotyping	19
nssv15670651	copy number loss	7-0200-003	SNP array	Genotyping	24
nssv15672205	copy number loss	9-0016-003	SNP array	Genotyping	25
nssv15674756	copy number loss	205648	SNP array	Genotyping	18
nssv15678382	copy number loss	208583	SNP array	Genotyping	20
nssv15679347	copy number loss	208584	SNP array	Genotyping	14
nssv15698025	copy number loss	198587	SNP array	Genotyping	22
nssv15699151	copy number loss	201955	SNP array	Genotyping	21
nssv15701262	copy number loss	205293-2	SNP array	Genotyping	16
nssv15702868	copy number loss	201871	SNP array	Genotyping	22

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15611993	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15618562	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15620127	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15620776	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15621305	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15621439	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15621816	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15622316	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15622353	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15623183	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15624803	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15625020	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15625724	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15626488	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15627851	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15628667	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15630055	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15635145	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15637884	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15639142	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15641322	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15642384	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15642618	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15646959	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15647011	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15649452	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15652154	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15652717	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15652909	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15654582	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15656299	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15657145	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15657558	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15658249	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15659232	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15660852	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15661020	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15661485	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15662398	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15668047	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15669580	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15670651	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15672205	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15674756	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15678382	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15679347	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15698025	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15699151	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15701262	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15702868	Remapped	Perfect	NC_000006.12:g.(?_ 257061)_(294826_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,061	294,826
nssv15611993	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15618562	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15620127	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15620776	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15621305	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15621439	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15621816	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15622316	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15622353	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15623183	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15624803	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15625020	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15625724	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15626488	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15627851	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15628667	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15630055	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15635145	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15637884	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15639142	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15641322	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15642384	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15642618	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15646959	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15647011	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15649452	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15652154	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15652717	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15652909	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15654582	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15656299	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15657145	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15657558	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15658249	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15659232	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15660852	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15661020	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15661485	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15662398	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15668047	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15669580	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15670651	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15672205	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15674756	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15678382	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15679347	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15698025	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15699151	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15701262	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826
nssv15702868	Submitted genomic		NC_000006.11:g.(?_ 257061)_(294826_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,061	294,826

dbVar

Database of genomic structural variation

nsv4367386

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Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant