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dbVar

Database of genomic structural variation

nsv4367431

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:26,605

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 539 SVs from 78 studies. See in: genome view

Remapped(Score: Perfect):160,120,139-160,146,743

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4367431	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	160,120,139	160,146,743
nsv4367431	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000004.11	Chr4	161,041,291	161,067,895

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15632018	copy number loss	10-0001-003	SNP array	Genotyping	22
nssv15633256	copy number loss	11-0016-003	SNP array	Genotyping	23
nssv15676159	copy number loss	166977	SNP array	Genotyping	15
nssv15699780	copy number loss	226267	SNP array	Genotyping	35

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15632018	Remapped	Perfect	NC_000004.12:g.(?_ 160120139)_(160146 743_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	160,120,139	160,146,743
nssv15633256	Remapped	Perfect	NC_000004.12:g.(?_ 160120139)_(160146 743_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	160,120,139	160,146,743
nssv15676159	Remapped	Perfect	NC_000004.12:g.(?_ 160120139)_(160146 743_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	160,120,139	160,146,743
nssv15699780	Remapped	Perfect	NC_000004.12:g.(?_ 160120139)_(160146 743_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	160,120,139	160,146,743
nssv15632018	Submitted genomic		NC_000004.11:g.(?_ 161041291)_(161067 895_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	161,041,291	161,067,895
nssv15633256	Submitted genomic		NC_000004.11:g.(?_ 161041291)_(161067 895_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	161,041,291	161,067,895
nssv15676159	Submitted genomic		NC_000004.11:g.(?_ 161041291)_(161067 895_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	161,041,291	161,067,895
nssv15699780	Submitted genomic		NC_000004.11:g.(?_ 161041291)_(161067 895_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	161,041,291	161,067,895

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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