nsv4367454
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:11
- Validation:Not tested
- Clinical Assertions: No
- Region Size:126,990
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2537 SVs from 95 studies. See in: genome view
Overlapping variant regions from other studies: 2541 SVs from 95 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4367454 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 12,000,099 | 12,127,088 |
| nsv4367454 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000009.11 | Chr9 | 12,000,099 | 12,127,088 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15615215 | copy number loss | 1-0754-003 | SNP array | Genotyping | 12 |
| nssv15620236 | copy number loss | 1-0952-002 | SNP array | Genotyping | 24 |
| nssv15650734 | copy number loss | 2-1363-001 | SNP array | Genotyping | 21 |
| nssv15650761 | copy number loss | 2-1363-003 | SNP array | Genotyping | 26 |
| nssv15656777 | copy number loss | 3-0600-000 | SNP array | Genotyping | 23 |
| nssv15671180 | copy number loss | 7-0247-003 | SNP array | Genotyping | 20 |
| nssv15674427 | copy number loss | 9-0035-002 | SNP array | Genotyping | 18 |
| nssv15676793 | copy number loss | 174811 | SNP array | Genotyping | 18 |
| nssv15686314 | copy number loss | OCD31-S_896571 | SNP array | Genotyping | 20 |
| nssv15687095 | copy number loss | OCD31-S_896573 | SNP array | Genotyping | 20 |
| nssv15687602 | copy number loss | OCD164-8961143 | SNP array | Genotyping | 13 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15615215 | Remapped | Perfect | NC_000009.12:g.(?_ 12000099)_(1212708 8_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 12,000,099 | 12,127,088 |
| nssv15620236 | Remapped | Perfect | NC_000009.12:g.(?_ 12000099)_(1212708 8_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 12,000,099 | 12,127,088 |
| nssv15650734 | Remapped | Perfect | NC_000009.12:g.(?_ 12000099)_(1212708 8_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 12,000,099 | 12,127,088 |
| nssv15650761 | Remapped | Perfect | NC_000009.12:g.(?_ 12000099)_(1212708 8_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 12,000,099 | 12,127,088 |
| nssv15656777 | Remapped | Perfect | NC_000009.12:g.(?_ 12000099)_(1212708 8_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 12,000,099 | 12,127,088 |
| nssv15671180 | Remapped | Perfect | NC_000009.12:g.(?_ 12000099)_(1212708 8_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 12,000,099 | 12,127,088 |
| nssv15674427 | Remapped | Perfect | NC_000009.12:g.(?_ 12000099)_(1212708 8_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 12,000,099 | 12,127,088 |
| nssv15676793 | Remapped | Perfect | NC_000009.12:g.(?_ 12000099)_(1212708 8_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 12,000,099 | 12,127,088 |
| nssv15686314 | Remapped | Perfect | NC_000009.12:g.(?_ 12000099)_(1212708 8_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 12,000,099 | 12,127,088 |
| nssv15687095 | Remapped | Perfect | NC_000009.12:g.(?_ 12000099)_(1212708 8_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 12,000,099 | 12,127,088 |
| nssv15687602 | Remapped | Perfect | NC_000009.12:g.(?_ 12000099)_(1212708 8_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 12,000,099 | 12,127,088 |
| nssv15615215 | Submitted genomic | NC_000009.11:g.(?_ 12000099)_(1212708 8_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 12,000,099 | 12,127,088 | ||
| nssv15620236 | Submitted genomic | NC_000009.11:g.(?_ 12000099)_(1212708 8_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 12,000,099 | 12,127,088 | ||
| nssv15650734 | Submitted genomic | NC_000009.11:g.(?_ 12000099)_(1212708 8_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 12,000,099 | 12,127,088 | ||
| nssv15650761 | Submitted genomic | NC_000009.11:g.(?_ 12000099)_(1212708 8_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 12,000,099 | 12,127,088 | ||
| nssv15656777 | Submitted genomic | NC_000009.11:g.(?_ 12000099)_(1212708 8_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 12,000,099 | 12,127,088 | ||
| nssv15671180 | Submitted genomic | NC_000009.11:g.(?_ 12000099)_(1212708 8_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 12,000,099 | 12,127,088 | ||
| nssv15674427 | Submitted genomic | NC_000009.11:g.(?_ 12000099)_(1212708 8_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 12,000,099 | 12,127,088 | ||
| nssv15676793 | Submitted genomic | NC_000009.11:g.(?_ 12000099)_(1212708 8_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 12,000,099 | 12,127,088 | ||
| nssv15686314 | Submitted genomic | NC_000009.11:g.(?_ 12000099)_(1212708 8_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 12,000,099 | 12,127,088 | ||
| nssv15687095 | Submitted genomic | NC_000009.11:g.(?_ 12000099)_(1212708 8_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 12,000,099 | 12,127,088 | ||
| nssv15687602 | Submitted genomic | NC_000009.11:g.(?_ 12000099)_(1212708 8_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 12,000,099 | 12,127,088 |